CX286881

Overview
NameCX286881
Unique NameCX286881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 2
Query:  263 EERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 457
            + +K YRGVR+RPWGK+AAEIRDP ++  R+WLGTF +  +AA  YD+AA ++RG  A+ NF ++
Sbjct:  112 QNQKKYRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQ 175          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.462e-14
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  212 NWTESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNF 448
            N T S  K+ +    D +    + GVRRRPWG+YAAEIRDP  K  R WLGTFD+  +AA AYD AA  MRG +A  NF
Sbjct:    2 NTTSSKSKKKQ----DDQVGTRFLGVRRRPWGRYAAEIRDPTTK-ERHWLGTFDTAEEAALAYDRAARSMRGTRARTNF 75          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.462e-14
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  254 ADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 457
            + T     Y GVR+R WGK+ +EIR+P RK SR+WLG+F     AAKAYD AAF ++GRKA LNFP E
Sbjct:   37 SSTTRHPVYHGVRKRRWGKWVSEIREP-RKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEE 103          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.828e-14
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  218 TESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGAD 469
            TE P++     L  + E K Y+G+R R WGK+ AEIR+P  K SR+WLG++ + V AA+AYD+A F +RG  A LNFP E   D
Sbjct:   21 TEKPKRN----LISSNE-KRYKGIRMRKWGKWVAEIREP-NKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEVFKD 98          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.828e-14
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  218 TESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            TE   K+ + K   T+E+  YRG R R WGK+ +EIR+P RK SR+WLGTF +   AA+A+D AA  ++G  AILNFP
Sbjct:    9 TECSSKKKKEK---TKEKGVYRGARMRSWGKWVSEIREP-RKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFP 82          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:  272 KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            K YRGVR+R WGK+ AEIR P R  +R+WLGTFD+  +AA AYD AAF++RG  A LNFP
Sbjct:  141 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFP 199          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  206 SSNWTESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            S+  T+  + ++   +  T   K YRGVR+R WGK+ AEIR P R  +RVWLGTF++   AA AYD+AA+ +RG  A LNFP
Sbjct:  208 STTKTQPMKSKTRKVVQTTTPTKLYRGVRQRHWGKWVAEIRLP-RNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFP 288          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 2
Query:  194 TCLGSSNWTESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNF 448
            +C  S       Q++ +P+     E   Y GVRRRPWG+YAAEIR+P  K  R WLGTFD+  +AA AYD AA  +RG  A  NF
Sbjct:   11 SCSRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTK-ERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 2
Query:  260 TEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            T+++K YRGVR+R WGK+ AEIR P  +  RVWLGT+D+   AA AYD AA+++RG  A LNFP
Sbjct:  130 TKKKKLYRGVRQRHWGKWVAEIRLPQNR-MRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFP 192          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  278 YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            YRGVR+R WGK+ +EIR+P  K +R+WLG+F++   AA AYD AAF  RGR+A LNFP
Sbjct:   24 YRGVRKRKWGKWVSEIREPGTK-NRIWLGSFETPEMAATAYDVAAFHFRGREARLNFP 80          
The following BLAST results are available for this feature:
BLAST of CX286881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
CRF4_ARATH2.616e-1453.85Ethylene-responsive transcription factor CRF4 OS=A... [more]
LEP_ARATH4.462e-1453.16Ethylene-responsive transcription factor LEP OS=Ar... [more]
ERF23_ARATH4.462e-1457.35Ethylene-responsive transcription factor ERF023 OS... [more]
RAP29_ARATH5.828e-1448.81Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF42_ARATH5.828e-1451.28Ethylene-responsive transcription factor ERF042 OS... [more]
ERF55_ARATH7.611e-1463.33Ethylene-responsive transcription factor ERF055 OS... [more]
ERF62_ARATH9.941e-1448.78Ethylene-responsive transcription factor ERF062 OS... [more]
ERF87_ARATH1.298e-1348.24Ethylene-responsive transcription factor ERF087 OS... [more]
ERF61_ARATH1.298e-1357.81Ethylene-responsive transcription factor ERF061 OS... [more]
ERF21_ARATH1.298e-1360.34Ethylene-responsive transcription factor ERF021 OS... [more]

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Properties
Property NameValue
Genbank descriptionC01002B06Rv Veg1 Citrus clementina cDNA clone C01002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286881 ID=CX286881; Name=CX286881; organism=Citrus clementina; type=EST; length=470bp
CAACATGACAACGTTGGAAGAAGAATCATCCATCCTGGAATTCATTCGCC
AGTTTCTTCTCGGAGACTTTACCTCCTTAGACGACCCAAATCTCTCTTTT
CTCCAGCCTATGGAGTCAGAATTCCCTGTGATCAAATCCGAACCCGACTC
CCCCACCTTTTGTGAAATAATAAAACCTGAACCATTGGACATAACGTGTT
TGGGTTCCAGTAATTGGACAGAATCACCTCAAAAGCGTTCGGAGCCGAAG
CTGGCGGACACTGAAGAGAGGAAGCATTACAGGGGAGTAAGAAGAAGGCC
GTGGGGCAAGTATGCGGCTGAAATCCGGGACCCGGCAAGAAAGGGCAGCA
GGGTTTGGTTGGGAACTTTTGATAGTGATGTTGATGCTGCTAAAGCTTAT
GATTCTGCTGCCTTCCGGATGAGGGGTCGCAAAGCAATCTTGAATTTCCC
TCTGGAGGCTGGAGCTGATA
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