CX286881

Overview
NameCX286881
Unique NameCX286881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  251 LADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            +A  +  K Y+G+R R WGK+ AEIR+P  K SR+WLG++ +   AA+AYD+A F +RG  A LNFP
Sbjct:   21 VATRKRDKPYKGIRMRKWGKWVAEIREP-NKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFP 86          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  278 YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            YRG+RRR WGK+ +EIR+P +K +R+WLG++++   AA AYD+AA  +RGR   LNFP
Sbjct:   20 YRGIRRRKWGKWVSEIREPGKK-TRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFP 76          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.415e-13
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  278 YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNF 448
            YRGVR+RPWGK+AAEIRDP+ + +R+WLGTF +  +AA  YD AA R++G  A  NF
Sbjct:   99 YRGVRQRPWGKFAAEIRDPSSR-TRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  266 ERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPL 454
            + K +RGVR+R WG + AEIR P  K  R+WLGTF++  +AA+AYD AA  M GR A  NFPL
Sbjct:    3 QTKKFRGVRQRHWGSWVAEIRHPLLK-RRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  239 SEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            S+ +  +  ++  YRGVR R WGK+ +EIR+P RK SR+WLGTF +   A +A+D AA  ++G  AILNFP
Sbjct:    6 SDKEKKENNKQPVYRGVRMRSWGKWVSEIREP-RKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFP 75          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.875e-12
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  203 GSSNWTESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            G S+ T++ QK          ++ ++RGVR R WGK+ +EIR+P RK SR+WLGTF +   AA+A+D AA  ++G  A LNFP
Sbjct:   22 GKSSKTKNEQK-------GVSKQPNFRGVRMRQWGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFP 96          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  221 ESPQKRSEPKLADTEERK-HYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 463
            +S  KR +  ++D  +    YRGVR R WGK+ +EIR+P RK SR+WLGT+ +   AA+A+D AA  ++G    LNFP  +G
Sbjct:   51 DSGGKRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREP-RKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELSG 131          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  278 YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 463
            YRGVR R WGK+ +EIR+P RK SR+WLGT+ +   AA+A+D AA  ++G  A LNFP  AG
Sbjct:  100 YRGVRMRSWGKWVSEIREP-RKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAG 160          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  272 KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            K Y+G+R R WGK+ AEIR+P  K SR+WLG++ +   AA+AYD+A F +RG  A LNFP
Sbjct:   26 KPYKGIRMRKWGKWVAEIREP-NKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFP 84          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2
Query:  269 RKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 451
            R  +RGVR+R WGK+ AEIR+P R GSR+WLGTF +  +AA AYD AA  M G  A LNFP
Sbjct:   76 RCSFRGVRQRIWGKWVAEIREPNR-GSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFP 135          
The following BLAST results are available for this feature:
BLAST of CX286881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RA210_ARATH8.415e-1350.75Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF22_ARATH8.415e-1355.17Ethylene-responsive transcription factor ERF022 OS... [more]
CRF5_ARATH8.415e-1359.65Ethylene-responsive transcription factor CRF5 OS=A... [more]
WIN1_ARATH1.435e-1255.56Ethylene-responsive transcription factor WIN1 OS=A... [more]
ERF43_ARATH1.435e-1249.30Ethylene-responsive transcription factor ERF043 OS... [more]
ERF39_ARATH1.875e-1245.78Ethylene-responsive transcription factor ERF039 OS... [more]
ERF35_ARATH2.448e-1245.12Ethylene-responsive transcription factor ERF035 OS... [more]
ERF34_ARATH2.448e-1256.45Ethylene-responsive transcription factor ERF034 OS... [more]
ERF08_ARATH2.448e-1255.00Ethylene-responsive transcription factor ERF008 OS... [more]
DRE2A_ARATH2.448e-1260.66Dehydration-responsive element-binding protein 2A ... [more]

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Properties
Property NameValue
Genbank descriptionC01002B06Rv Veg1 Citrus clementina cDNA clone C01002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286881 ID=CX286881; Name=CX286881; organism=Citrus clementina; type=EST; length=470bp
CAACATGACAACGTTGGAAGAAGAATCATCCATCCTGGAATTCATTCGCC
AGTTTCTTCTCGGAGACTTTACCTCCTTAGACGACCCAAATCTCTCTTTT
CTCCAGCCTATGGAGTCAGAATTCCCTGTGATCAAATCCGAACCCGACTC
CCCCACCTTTTGTGAAATAATAAAACCTGAACCATTGGACATAACGTGTT
TGGGTTCCAGTAATTGGACAGAATCACCTCAAAAGCGTTCGGAGCCGAAG
CTGGCGGACACTGAAGAGAGGAAGCATTACAGGGGAGTAAGAAGAAGGCC
GTGGGGCAAGTATGCGGCTGAAATCCGGGACCCGGCAAGAAAGGGCAGCA
GGGTTTGGTTGGGAACTTTTGATAGTGATGTTGATGCTGCTAAAGCTTAT
GATTCTGCTGCCTTCCGGATGAGGGGTCGCAAAGCAATCTTGAATTTCCC
TCTGGAGGCTGGAGCTGATA
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