CX286895

Overview
NameCX286895
Unique NameCX286895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: NAD1_CAEEL (Sodium-dependent low-affinity dicarboxylate transporter 1 OS=Caenorhabditis elegans GN=nac-1 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.110e-17
Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 3
Query:  159 YILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            +++ G LL     +    D        L  +A + ++W+ EA+P+ IT+  P+ LFPLFGI  ++ VA +Y+ D   L +G  ++ALAVE   +H R+AL +      EP     ++ G  G T F+SMW+ N A   +M
Sbjct:   18 FVIWGALLIFSPLLMFVGDSHGLQAKCLYCVAVMGSYWVFEALPLAITAFIPMILFPLFGIMRSEEVARAYLPDTCFLFMGGLMVALAVEKCELHARVALFVLKTVGSEPAR---VMAGFMGVTGFLSMWISNTATTALM 154          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: S13A5_RAT (Solute carrier family 13 member 5 OS=Rattus norvegicus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.368e-17
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  246 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            V+  +  +W T+ +P+ ITS+ P+ LFPL  +  +  V   YM D   L LGS I+A AVE + +HKR+AL + +LF G    P  L+LG    TAF+SMW+ N A   +M
Sbjct:   41 VIILMAIYWCTDVIPVAITSLLPVLLFPLLKVLDSKQVCVQYMTDTNMLFLGSLIVATAVERWELHKRIALRM-LLFVG--TKPSRLMLGFMFVTAFLSMWISNTATTAMM 148          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.011e-17
Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 3
Query:  240 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            L V+  +  +W TEA+P+ +T++ P+ LFP  GI  ++ V   Y  D   L L   I+A A+E +N+H+R+AL I +L     + P  L+LG+  TT+F+SMW+ N A+  +M
Sbjct:   42 LFVILLMAVYWCTEALPLSVTALLPIVLFPFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKILMLV---GVQPARLILGMMVTTSFLSMWLSNTASTAMM 151          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.157e-17
Identity = 42/113 (37.17%), Postives = 68/113 (60.18%), Query Frame = 3
Query:  240 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            L V+  +  +W TEA+P+ +T++ P+ LFP  GI  +  V   Y  D   L L   I+A A+E +N+H+R+AL + +L     + P  L+LG+  TT+F+SMW+ N A+  +M
Sbjct:   42 LYVILLMAVYWCTEALPLSVTALLPIILFPFMGILPSSKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKVLMLV---GVQPARLILGMMVTTSFLSMWLSNTASTAMM 151          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.664e-16
Identity = 42/113 (37.17%), Postives = 67/113 (59.29%), Query Frame = 3
Query:  240 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            L V+  +  +W TEA+P+ +T++ P+ LFP  GI  +  V   Y  D   L L   I+A A+E  N+H+R+AL + +L     + P  L+LG+  TT+F+SMW+ N A+  +M
Sbjct:   42 LYVILLMAVYWCTEALPLSVTALLPIILFPFMGILPSSKVCPQYFLDTNFLFLSGLIMASAIEERNLHRRIALKVLMLV---GVQPARLILGMMVTTSFLSMWLSNTASTAMM 151          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: S13A2_RAT (Solute carrier family 13 member 2 OS=Rattus norvegicus GN=Slc13a2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  270 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            W TEA+P+ +T + P+ LF L GI  A      Y  D   L +G  ++A+AVEH+N+HKR+AL + ++     +   LLLLG    TAF+SMW+ N A   +M
Sbjct:   49 WCTEALPLAVTVLFPIVLFLLMGIMDASE-GLEYFKDTNILFVGGLMVAIAVEHWNLHKRIALQVLLII---GVRAALLLLGFMLVTAFLSMWISNTATTAMM 147          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: NAD3_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 3 OS=Caenorhabditis elegans GN=nac-3 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.119e-14
Identity = 48/153 (31.37%), Postives = 77/153 (50.33%), Query Frame = 3
Query:  129 LKTIFTPNNFYILL---GPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            L  + TP  F  +L   GP      CVC+                 +  +W++E +P+ +T+M P+ LFPL G+  A+T A  YM+D   L +G  I+A AVE  ++H+R+AL++      E   P  ++LG    TA +S ++ N A   +M
Sbjct:   55 LVLVLTPLFFGQMLNWEGPEWKCAYCVCI-----------------IAVYWMSEVMPLAVTAMLPVVLFPLVGVLDANTTAKEYMNDTNFLFIGGLIMAAAVEKCDLHERVALSVLRCVGSE---PKWIMLGFMTVTALLSSFISNTATTAMM 187          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: INDY2_DROME (Protein I'm not dead yet 2 OS=Drosophila melanogaster GN=Indy-2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  270 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            W+TE +P+ +T++ PL   PL G+ +A  V   Y  D I + LG  I+AL +E+ N+H R+AL +  +  G P     L +G+   + F+ +W+ N A   +M
Sbjct:   60 WITETLPIYVTALFPLVFCPLLGLVNASIVCKQYFTDTIVVFLGGLIVALGIEYSNLHTRIALRVIRIVGGSPRR---LFVGLMSVSTFMGLWISNSAGTAMM 159          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: S13A4_HUMAN (Solute carrier family 13 member 4 OS=Homo sapiens GN=SLC13A4 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 39/111 (35.14%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  246 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            VL     +W++EAVP+   ++ P FL+P FG+  ++ VA  Y  +   L++G   +A AVE +N+HKR+AL + +L  G    P +LLL     T  +SMW+ N +   ++
Sbjct:   40 VLIVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSNEVAAEYFKNTTLLLVGVICVAAAVEKWNLHKRIALRM-VLMAG--AKPGMLLLCFMCCTTLLSMWLSNTSTTAMV 147          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: YKG6_CAEEL (Uncharacterized transporter B0285.6 OS=Caenorhabditis elegans GN=B0285.6 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 3
Query:  246 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            V+  +  +W+ E VP+ +TS  P+   P  GI S   VA  Y  D   +   S +L+LAVE   +HKR+AL + + + G    P  L+ G    T+F+S+W+ + A   +M
Sbjct:   45 VILTMSCYWVAEVVPLAVTSFIPMIALPFLGIVSIKEVAPKYFADTNIVFFNSLMLSLAVEECQLHKRIALKM-LTYVG--TRPHWLMAGFMIITSFISLWISDTACCALM 152          
The following BLAST results are available for this feature:
BLAST of CX286895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NAD1_CAEEL4.110e-1733.57Sodium-dependent low-affinity dicarboxylate transp... [more]
S13A5_RAT5.368e-1741.44Solute carrier family 13 member 5 OS=Rattus norveg... [more]
S13A3_HUMAN7.011e-1738.05Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
S13A3_MOUSE9.157e-1737.17Solute carrier family 13 member 3 OS=Mus musculus ... [more]
S13A3_RAT2.664e-1637.17Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A2_RAT5.025e-1540.78Solute carrier family 13 member 2 OS=Rattus norveg... [more]
NAD3_CAEEL1.119e-1431.37Sodium-dependent high-affinity dicarboxylate trans... [more]
INDY2_DROME5.556e-1433.98Protein I'm not dead yet 2 OS=Drosophila melanogas... [more]
S13A4_HUMAN9.476e-1435.14Solute carrier family 13 member 4 OS=Homo sapiens ... [more]
YKG6_CAEEL5.200e-1233.33Uncharacterized transporter B0285.6 OS=Caenorhabdi... [more]

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Properties
Property NameValue
Genbank descriptionC01002C09Rv Veg1 Citrus clementina cDNA clone C01002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286895 ID=CX286895; Name=CX286895; organism=Citrus clementina; type=EST; length=579bp
GTATCGTGTTACACGTTCACTGCAAAATGAACGGTGACCACGAAGCTCAT
CCAAATTCTGGTGACATCAAGGCGCCACTCCTACCTTCCCATCGTCAAAT
CCAACGGTCACCAAGCTCCCACTTCACATTGAAAACCATTTTCACACCAA
ACAATTTCTACATCCTCCTAGGACCTCTCCTGTGCGCTGTTATATGTGTA
TGTGTGAAGCTCGATGGGCAGGCGACAAGCAGGAACATGTTGGGTGTTCT
TGCTTGGGTCTTCGCTTGGTGGCTCACGGAGGCCGTACCCATGCCCATTA
CCTCTATGGCGCCTCTGTTTCTGTTTCCTCTGTTTGGGATCTCTTCTGCT
GACACCGTTGCTCATTCTTACATGGATGATGTTATTGCCCTCGTTCTTGG
TAGCTTTATTCTTGCTCTTGCCGTTGAGCACTACAACATTCACAAAAGAT
TGGCCTTAAATATAACTATTCTATTCTGTGGAGAGCCAATGAATCCGCCC
TTGCTGCTTCTTGGGATATGTGGCACGACAGCATTCGTGAGCATGTGGAT
GCATAACGTGGCAGCAGCAGTGATCATGA
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