CX286895

Overview
NameCX286895
Unique NameCX286895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: NAD2_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 2 OS=Caenorhabditis elegans GN=nac-2 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11
Identity = 43/139 (30.94%), Postives = 72/139 (51.80%), Query Frame = 3 
Query:  162 ILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            +LLGPL      V V L         L  + ++  +W+ EA P+ +TS+ PL L+P+  I  +  ++  Y  D I L + + I+A+AVE   +H+R+AL    L        P++LLG    T+F+S ++ + A   +M
Sbjct:   15 VLLGPL------VAVPLLFFGPEYRCLFSIIFLSTYWIGEAFPIGVTSLFPLALYPILQIVPSKQISPVYFKDSIVLFMCTLIMAMAVEATGLHRRIALK---LLTKVGAKQPVMLLGFMCITSFISFFVSDTACTALM 144
The following BLAST results are available for this feature:
BLAST of CX286895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NAD2_CAEEL1.976e-1130.94Sodium-dependent high-affinity dicarboxylate trans... [more]

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Properties
Property NameValue
Genbank descriptionC01002C09Rv Veg1 Citrus clementina cDNA clone C01002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286895 ID=CX286895; Name=CX286895; organism=Citrus clementina; type=EST; length=579bp
GTATCGTGTTACACGTTCACTGCAAAATGAACGGTGACCACGAAGCTCAT
CCAAATTCTGGTGACATCAAGGCGCCACTCCTACCTTCCCATCGTCAAAT
CCAACGGTCACCAAGCTCCCACTTCACATTGAAAACCATTTTCACACCAA
ACAATTTCTACATCCTCCTAGGACCTCTCCTGTGCGCTGTTATATGTGTA
TGTGTGAAGCTCGATGGGCAGGCGACAAGCAGGAACATGTTGGGTGTTCT
TGCTTGGGTCTTCGCTTGGTGGCTCACGGAGGCCGTACCCATGCCCATTA
CCTCTATGGCGCCTCTGTTTCTGTTTCCTCTGTTTGGGATCTCTTCTGCT
GACACCGTTGCTCATTCTTACATGGATGATGTTATTGCCCTCGTTCTTGG
TAGCTTTATTCTTGCTCTTGCCGTTGAGCACTACAACATTCACAAAAGAT
TGGCCTTAAATATAACTATTCTATTCTGTGGAGAGCCAATGAATCCGCCC
TTGCTGCTTCTTGGGATATGTGGCACGACAGCATTCGTGAGCATGTGGAT
GCATAACGTGGCAGCAGCAGTGATCATGA
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