CX286896

Overview
NameCX286896
Unique NameCX286896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.022e-26
Identity = 61/127 (48.03%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFID 381
            A+GGR AEE++F E   TTGA +D  Q +++AR MV  FG S K+G V  G   G+PFLG+ M +Q DYS   A  +D EVR+L+E A+T A +I+T + D+L  LA  L+EKET+   E  S+F D
Sbjct:  480 AMGGRAAEELVFREP--TTGAVSDIEQATKIARSMVTEFGMSSKLGAVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFAD 604          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.022e-26
Identity = 61/127 (48.03%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFID 381
            A+GGR AEE++F E   TTGA +D  Q +++AR MV  FG S K+G V  G   G+PFLG+ M +Q DYS   A  +D EVR+L+E A+T A +I+T + D+L  LA  L+EKET+   E  S+F D
Sbjct:  480 AMGGRAAEELVFREP--TTGAVSDIEQATKIARSMVTEFGMSSKLGAVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFAD 604          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.022e-26
Identity = 61/127 (48.03%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFID 381
            A+GGR AEE++F E   TTGA +D  Q +++AR MV  FG S K+G V  G   G+PFLG+ M +Q DYS   A  +D EVR+L+E A+T A +I+T + D+L  LA  L+EKET+   E  S+F D
Sbjct:  480 AMGGRAAEELVFREP--TTGAVSDIEQATKIARSMVTEFGMSSKLGAVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFAD 604          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.022e-26
Identity = 56/124 (45.16%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            A+GGR AEE +FG++ VTTGA  D  QV+ +ARQMV RFG S  +G +++   GG  FLG  + ++ +YS   A  +DA+VR+L E  +  A++I+    +++ +L  LLIEKET+DGEEF  +
Sbjct:  488 AMGGRAAEEEVFGDDEVTTGAGGDLQQVTEMARQMVTRFGMSN-LGPISLESSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGHQMARKIVQEQREVVDRLVDLLIEKETIDGEEFRQI 610          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.902e-24
Identity = 58/129 (44.96%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVA-IGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGK 387
            LGGRVAEEV FGE  V+TGA NDF + + +AR+MV  +G S+K+G +  I G GG  FLG+ + ++++YS A A  +D EV+ +++  Y R KQI+  + D L  +A+ L++ ET+D E+  SL  +GK
Sbjct:  484 LGGRVAEEVTFGE--VSTGAHNDFQRATGIARKMVTEYGMSEKLGPMQFISGSGGQVFLGRDIQNEQNYSDAIAHEIDLEVQRIIKECYARCKQILLENKDSLDLVAKTLLDMETLDAEQIKSLVHEGK 610          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.950e-24
Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLF 375
            A+GGR AEE++F E   TTGA +D  + +++AR MV  FG S K+G V  G   G+PFLG+ M +Q DYS   A  +D EVR+L+E A+T A +I+T + D+L  LA  L+EKET+   E   +F
Sbjct:  480 AMGGRAAEELVFREP--TTGAVSDIEKATKIARSMVTEFGMSSKLGAVRYGSEHGDPFLGRTMGTQADYSHEVARDIDDEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELEGIF 602          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.466e-24
Identity = 57/128 (44.53%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIG-GPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDG 384
            LGGRVAEE+IFGE  V+TGA NDF + + +AR+MV  FG S+K+G +  G   GG  FLG+  +++++YS   A  +D E++ +++  Y RAKQI+T + D L  +AQ L++ ET+D E+   L   G
Sbjct:  479 LGGRVAEEIIFGE--VSTGAHNDFQRATNIARRMVTEFGMSEKLGPLQFGQSQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYERAKQILTENRDKLELIAQTLLKVETLDAEQIKHLIDHG 604          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.444e-24
Identity = 53/122 (43.44%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    7 GGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            GGR+AEE+I+G E+V+TGASND    + +AR MV ++GFS+K+G +      G  FLG+ ++  K  S  TA ++D EV+ L+E  Y RA+QI+T ++DILH +   L++ ET+D  +   L
Sbjct:  471 GGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQILTDNMDILHAMKDALMKYETIDAPQIDDL 592          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.444e-24
Identity = 53/122 (43.44%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    7 GGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            GGR+AEE+I+G E+V+TGASND    + +AR MV ++GFS+K+G +      G  FLG+ ++  K  S  TA ++D EV+ L+E  Y RA+QI+T ++DILH +   L++ ET+D  +   L
Sbjct:  471 GGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQILTDNMDILHAMKDALMKYETIDAPQIDDL 592          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.103e-23
Identity = 52/122 (42.62%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    7 GGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            GGR+AEE+I+G E+V+TGASND    + +AR MV ++GFS+K+G +      G  FLG+ ++  K  S  TA ++D EV+ L+E  Y RA+Q++T ++DILH +   L++ ET+D  +   L
Sbjct:  471 GGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDL 592          
The following BLAST results are available for this feature:
BLAST of CX286896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
FTSH_MYCTU9.022e-2648.03Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA9.022e-2648.03Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO9.022e-2648.03Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH1_SYNY39.022e-2645.16Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FTSH_BACPF2.902e-2444.96Cell division protease ftsH homolog OS=Bacillus ps... [more]
FTSH_MYCLE4.950e-2446.40Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_BACSU6.466e-2444.53Cell division protease ftsH homolog OS=Bacillus su... [more]
FTSH_SALTY8.444e-2443.44Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI8.444e-2443.44Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_SHIFL1.103e-2342.62Cell division protease ftsH OS=Shigella flexneri G... [more]

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Properties
Property NameValue
Genbank descriptionC01002C10Rv Veg1 Citrus clementina cDNA clone C01002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286896 ID=CX286896; Name=CX286896; organism=Citrus clementina; type=EST; length=475bp
GCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAAAATGT
GACAACAGGAGCATCAAATGACTTCATGCAAGTTTCACGGGTAGCACGGC
AGATGGTTGAAAGATTTGGGTTTAGCAAGAAAATTGGACAAGTTGCCATT
GGAGGACCTGGTGGAAATCCATTCTTGGGTCAACAAATGTCTTCTCAGAA
AGACTACTCCATGGCAACTGCCGATGTGGTGGATGCAGAGGTCAGAGAAT
TGGTTGAAACAGCATATACAAGGGCCAAGCAGATCATCACAACCCACATT
GACATCCTTCACAAGCTTGCTCAACTCCTCATAGAGAAAGAAACCGTTGA
TGGAGAAGAATTTATGAGCCTTTTCATTGATGGAAAAGCTGAGCTATTTG
TTGCCTGATTGTACATGAAAGAATCAGAATTCAGATTCGTGTTGTATATG
CCCATGTAAAATCAAGTAATTAAAT
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