CX286896

Overview
NameCX286896
Unique NameCX286896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6 contig Ccv1_Contig6:1..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.103e-23
Identity = 52/122 (42.62%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    7 GGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            GGR+AEE+I+G E+V+TGASND    + +AR MV ++GFS+K+G +      G  FLG+ ++  K  S  TA ++D EV+ L+E  Y RA+Q++T ++DILH +   L++ ET+D  +   L
Sbjct:  471 GGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDL 592          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.103e-23
Identity = 52/122 (42.62%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    7 GGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            GGR+AEE+I+G E+V+TGASND    + +AR MV ++GFS+K+G +      G  FLG+ ++  K  S  TA ++D EV+ L+E  Y RA+Q++T ++DILH +   L++ ET+D  +   L
Sbjct:  471 GGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDL 592          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.191e-23
Identity = 51/121 (42.15%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   10 GRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            GR+AE++I+GEEN++TGASND    + +AR MV ++GFS+K+G +      G  FLG+ M+  K  S  TA  +D EVR +V   Y RA++I+  ++DILH +   L++ ET++ E+   L
Sbjct:  217 GRLAEDLIYGEENISTGASNDIKVATNIARNMVTQWGFSEKLGPILYTEDEGEVFLGRSMAKAKHMSDETAHSIDEEVRAIVNRNYARAREILIDNMDILHAMKDALVKYETIEEEQIKQL 337          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.191e-23
Identity = 51/121 (42.15%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   10 GRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            GR+AE++I+GEEN++TGASND    + +AR MV ++GFS+K+G +      G  FLG+ M+  K  S  TA  +D EVR +V   Y RA++I+  ++DILH +   L++ ET++ E+   L
Sbjct:  471 GRLAEDLIYGEENISTGASNDIKVATNIARNMVTQWGFSEKLGPILYTEDEGEVFLGRSMAKAKHMSDETAHSIDEEVRAIVNRNYARAREILIDNMDILHAMKDALVKYETIEEEQIKQL 591          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.148e-23
Identity = 55/124 (44.35%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            A+ GRVAEE+IFG+E VT+GAS+D    +R+A+ MV  +G S K+G V  G    + +  +  SS  D S +T++++D EV+++V T Y  AK I+T H+D LH LA+ LIE ET+ G++  +L
Sbjct:  472 AMAGRVAEEIIFGKEKVTSGASSDIKMATRMAKAMVTDWGLSDKVGPVYHGSASEDMYTNRNSSS--DRSESTSELIDEEVKKIVTTGYDLAKDILTKHLDQLHILAKALIEYETLSGQQIKNL 593          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.219e-22
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPG-GNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGR AE+VIFGE  VTTGAS+D  QV+ +ARQMV RFG S  IG +A+     G  FLG  M+S  +Y+   AD +D EVR+++   Y +A +I+  +  ++  + + L++KET+DG+EF  L
Sbjct:  503 LGGRAAEQVIFGEPEVTTGASSDLQQVTNLARQMVTRFGMS-NIGPLALEDESTGQVFLGGNMASGSEYAENIADRIDDEVRKIITYCYEKAIEIVLDNRVVIDLIVEKLLDKETMDGDEFREL 625          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.219e-22
Identity = 53/122 (43.44%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    7 GGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            GGR+AEE+I+G  NV+TGA ND    + +AR MV ++GFSKK+G +      G  FLG+ ++  K  S  TA ++D EV+ LVE  Y RAK+I+  ++DILH +   LI+ ET++  +   L
Sbjct:  471 GGRLAEEIIYGVNNVSTGAHNDIKVATNLARNMVTQWGFSKKLGPLLYSEEEGEIFLGRTVTKSKHMSDETARIIDEEVKLLVEKNYNRAKKILEENLDILHAMKDALIKYETINSRQIDDL 592          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.080e-22
Identity = 50/115 (43.48%), Postives = 76/115 (66.09%), Query Frame = 1
Query:    7 GGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVD 351
            GGR+AEE+I+G +NV+TGA ND    + +AR MV ++GFS K+G +      G  FLG+ ++  K  S  TA ++D EV+ L+E  Y RA++I+  ++DILH +   LI+ ET+D
Sbjct:  471 GGRLAEEIIYGSQNVSTGAFNDIKVATNLARNMVTQWGFSDKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDEEVKLLIEVNYNRARKILNENLDILHAMKDALIKYETID 585          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.633e-22
Identity = 50/115 (43.48%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    7 GGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVD 351
            GGR+AEE+I+G +NV+TGA ND    + +A+ MV ++GFS+K+G +      G  FLG+ ++  K  S  TA ++D EV+ L+E  Y+RA+ I+  +IDILH + + LI+ ET+D
Sbjct:  471 GGRLAEEIIYGAKNVSTGAYNDIKIATSLAKNMVTQWGFSEKLGPLLYAEEEGEIFLGRSVAKAKHMSDETARIIDEEVKLLIEINYSRARNILNENIDILHAMKEALIKYETID 585          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.348e-21
Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGK 387
            +GGR+ EE++FG    T GASND  + + +AR MV  +G SKK+G V+  G     F+G+     K YS ATA ++D EVR ++  AY RAK+ I TH +    +A+ L++ ET+D ++ MSLF  GK
Sbjct:  512 MGGRLGEEIVFGV--ATPGASNDIEKATHIARSMVTEYGMSKKLGMVSYEGDH-QVFIGRDYGQTKTYSEATAVMIDDEVRRILGEAYDRAKEAIETHREQHKAIAEALLKYETLDAKQIMSLFKTGK 636          
The following BLAST results are available for this feature:
BLAST of CX286896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
FTSH_ECOLI1.103e-2342.62Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO571.103e-2342.62Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH2_HAEIN4.191e-2342.15Cell division protease ftsH homolog 2 OS=Haemophil... [more]
FTSH1_HAEIN4.191e-2342.15Cell division protease ftsH homolog 1 OS=Haemophil... [more]
FTSH_RICBR7.148e-2344.35Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_ODOSI1.219e-2245.97Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH_BUCBP1.219e-2243.44Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCAP2.080e-2243.48Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCAI4.633e-2243.48Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_LACLA1.348e-2142.97Cell division protease ftsH homolog OS=Lactococcus... [more]

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Properties
Property NameValue
Genbank descriptionC01002C10Rv Veg1 Citrus clementina cDNA clone C01002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286896 ID=CX286896; Name=CX286896; organism=Citrus clementina; type=EST; length=475bp
GCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAAAATGT
GACAACAGGAGCATCAAATGACTTCATGCAAGTTTCACGGGTAGCACGGC
AGATGGTTGAAAGATTTGGGTTTAGCAAGAAAATTGGACAAGTTGCCATT
GGAGGACCTGGTGGAAATCCATTCTTGGGTCAACAAATGTCTTCTCAGAA
AGACTACTCCATGGCAACTGCCGATGTGGTGGATGCAGAGGTCAGAGAAT
TGGTTGAAACAGCATATACAAGGGCCAAGCAGATCATCACAACCCACATT
GACATCCTTCACAAGCTTGCTCAACTCCTCATAGAGAAAGAAACCGTTGA
TGGAGAAGAATTTATGAGCCTTTTCATTGATGGAAAAGCTGAGCTATTTG
TTGCCTGATTGTACATGAAAGAATCAGAATTCAGATTCGTGTTGTATATG
CCCATGTAAAATCAAGTAATTAAAT
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