CX286896

Overview
NameCX286896
Unique NameCX286896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6 contig Ccv1_Contig6:1..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.300e-21
Identity = 56/129 (43.41%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKA 390
            + GRVAEE+IFG   VT+GAS+D    + +AR MV + G S  IG +   G  G+   G+Q +++   S ATA+++DAEV+ ++   Y  AK I+T HID LH LA  LIE ET+ G++  +L + G+A
Sbjct:  473 MAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSDLIGPI-FHGSSGDDMYGRQPNNET--SEATAELIDAEVKRIITQGYEFAKDILTKHIDQLHTLANALIEYETLSGQQIKNL-LSGRA 597          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.922e-21
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKA 390
            + GRVAEE+IFG   VT+GAS+D    + +AR MV + G S  IG +   G   +   G+Q S++   S ATA+++DAEV+ ++   Y  AK I+T HID LH LA  LIE ET+ G++  +L + G+A
Sbjct:  473 MAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSDLIGPI-FHGSNSDDMYGRQSSNE--ISEATAELIDAEVKRIITQGYEFAKDILTKHIDQLHTLANALIEYETLSGQQIKNL-LSGRA 597          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.922e-21
Identity = 56/129 (43.41%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKA 390
            + GRVAEE+IFG   VT+GAS+D    + +AR MV + G S  IG +   G   +   G+Q S++   S ATA+++DAEV++++   Y  AK I+T HID LH LA  LIE ET+ G++  +L + G+A
Sbjct:  473 MAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSDLIGPI-FHGSSSDDMYGRQPSNET--SEATAELIDAEVKKIITQGYEFAKDILTKHIDQLHTLANALIEYETLSGQQIKNL-LSGRA 597          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.738e-21
Identity = 55/129 (42.64%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKA 390
            + GRVAEE+IFG+  VT+GA++D    + +AR MV + G S  IG +   G   +   G+Q S++   S ATA ++DAEV++++   Y  AK I+T HID LH LA  LIE ET+ G++  +L + G+A
Sbjct:  473 MAGRVAEEIIFGKNKVTSGAASDIKGATNIARAMVTKAGLSDLIGPI-FHGSSSDDMYGRQQSNE--ISEATAKLIDAEVKKIITQGYEFAKDILTKHIDQLHTLANALIEYETLSGQQIKNL-LSGRA 597          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.738e-21
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            ALGGR AEE +FG   VTTGASND  QV+ +ARQMV RFG S  +G + +       FLG+ M    + S      +DA+VR ++E  Y +  +++  +  ++ ++ + L+EKET+DG+EF  L
Sbjct:  470 ALGGRAAEEAVFGNAEVTTGASNDLQQVTNLARQMVTRFGMS-SLGPLCLETGNEEIFLGRDMRLMPEVSEEVIAQIDAQVRGMIEACYEKVLELMQANRVVMDRIVEELMEKETLDGKEFRQL 592          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.542e-20
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGRVAEEVIFG++ VTTGA ND  +++ +ARQMV + G S  +G VA+   G   F G     + +YS   A  +D E++ +V  A+ RA +II  + +++  L   LI++ET++GE F  L
Sbjct:  528 LGGRVAEEVIFGDDEVTTGAGNDIEKITYLARQMVTKLGMS-SLGLVALEEEGDRNFSGGDWGKRSEYSEDIAARIDREIQAIVTAAHQRATRIIEENRNLMDLLVDALIDQETIEGEHFRQL 649          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 7.398e-20
Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFID 381
            +GGRVAEE+IFGE  VT+GAS+D  Q +++AR MV +FG SK++G VA          G+ MS++      T  ++++EV++L+E AY  AK I+T +   LH LA  L++ ET+ G++   L  D
Sbjct:  542 MGGRVAEELIFGESEVTSGASSDLEQATKLARAMVTKFGMSKEVGLVAHNYDDN----GKSMSTE------TRLLIESEVKQLLEKAYNNAKTILTVYNKELHALANALLQHETLSGKQIKELLTD 657          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.068e-18
Identity = 45/124 (36.29%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            AL GR  EE++FG   VT GA+ND  QV+ +ARQMV +FG S K+G + +       F+G+ +  + + S      VD EVR +++  Y +A+ I++ +  ++ ++   L+EKET++ +EFM +
Sbjct:  487 ALAGRAMEEIVFGLPEVTIGAANDIKQVTFMARQMVTKFGMS-KVGPICLENSSSEVFIGRDLMGRHELSEEMVAKVDLEVRSILKDCYIQARTILSQNRKLIDRVVNELVEKETIEAKEFMRI 609          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.395e-18
Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEE 360
            AL GRV+EE+ FG E +T+GAS+DF +V+R+A+  V ++G S  +G +A         +  + + QK +S ATA ++D E+R+LV+ AY R K+++  H   L  +AQ L++KE +   E
Sbjct:  615 ALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYVTQYGMSPTVGTIAYP-------IDTRETVQKPFSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGLENIAQRLLQKEVITYNE 727          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGP---GGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGR AEEV+FGE  VTTGA+ D  QV+RVAR+MV  FG S +IG  A+  P   GG+  L  +M ++   S   A  +DA VR +V+ AY  AK  +  +   + +L  +L+EKET+ G+EF ++
Sbjct:  540 LGGRAAEEVVFGEPEVTTGAAGDLQQVTRVARRMVTAFGMS-EIGPWALAEPAAQGGDVVL--RMLARSSMSERLAADIDAAVRTIVDEAYEVAKAHVRRNRAAIDQLVDVLMEKETLGGDEFRAI 662          
The following BLAST results are available for this feature:
BLAST of CX286896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
FTSH_RICCN2.300e-2143.41Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICPR3.922e-2143.41Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICFE3.922e-2143.41Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICTY8.738e-2142.64Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_CYAME8.738e-2141.13Cell division protease ftsH homolog OS=Cyanidiosch... [more]
FTSH2_SYNY32.542e-2042.28Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH4_ARATH7.398e-2042.06Cell division protease ftsH homolog 4, mitochondri... [more]
FTSH_CYACA1.068e-1836.29Cell division protease ftsH homolog OS=Cyanidium c... [more]
RCA1_SCHPO1.395e-1839.17Mitochondrial respiratory chain complexes assembly... [more]
FTSH6_ORYSJ1.822e-1844.44Cell division protease ftsH homolog 6, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC01002C10Rv Veg1 Citrus clementina cDNA clone C01002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286896 ID=CX286896; Name=CX286896; organism=Citrus clementina; type=EST; length=475bp
GCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAAAATGT
GACAACAGGAGCATCAAATGACTTCATGCAAGTTTCACGGGTAGCACGGC
AGATGGTTGAAAGATTTGGGTTTAGCAAGAAAATTGGACAAGTTGCCATT
GGAGGACCTGGTGGAAATCCATTCTTGGGTCAACAAATGTCTTCTCAGAA
AGACTACTCCATGGCAACTGCCGATGTGGTGGATGCAGAGGTCAGAGAAT
TGGTTGAAACAGCATATACAAGGGCCAAGCAGATCATCACAACCCACATT
GACATCCTTCACAAGCTTGCTCAACTCCTCATAGAGAAAGAAACCGTTGA
TGGAGAAGAATTTATGAGCCTTTTCATTGATGGAAAAGCTGAGCTATTTG
TTGCCTGATTGTACATGAAAGAATCAGAATTCAGATTCGTGTTGTATATG
CCCATGTAAAATCAAGTAATTAAAT
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