CX286896

Overview
NameCX286896
Unique NameCX286896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6 contig Ccv1_Contig6:1..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSS-QKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGR AEE++F  +++TTGA+ND  + + +A QMV  +G SK +G +A      N FLGQ M + ++  S  TA  +D EV+E+VE  + +A  I+  + D+L  +A+ ++EKE ++GEE   L
Sbjct:  495 LGGRAAEEIVF--DSITTGAANDLQRATDLAEQMVTTYGMSKVLGPLAYDKGQQNNFLGQGMGNPRRMVSDDTAKEIDLEVKEIVEQGHNQALAILEHNRDLLEAIAEKILEKEVIEGEELHHL 616          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.380e-18
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLF 375
            LGGR AEEV FG++ +TTGA ND  + + +A +MV  +G S K+G +AI     NPFLG  M++  D S      +D EV+ ++   Y +AK I+  + + L  + + L+EKET+  EEF+ +F
Sbjct:  474 LGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRV-ANPFLG-GMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVF 595          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.301e-18
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            +GGRVAEE+IFG+  VT+GAS+DF Q + VAR MV ++G SK++G V+          G+ MS++      T  +++ EV+  VE AY  AK I+  H   LH LA  L+E ET+ G +  ++
Sbjct:  545 MGGRVAEELIFGDSEVTSGASSDFQQATAVARAMVTKYGMSKQLGFVSYNYEDD----GKSMSTE------TRLLIEKEVKCFVENAYNNAKNILIKHNKELHALANALLEHETLTGAQIKNI 657          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.043e-18
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGK 387
            +GGRVAEE+IF  +  TTGASNDF Q +++AR MV  +G S+K+G V     G +  LG Q S QK  S  TA  +D EVR L+  A  +A +II ++ +    +A+ L++ ET+D  +  +L+  GK
Sbjct:  505 MGGRVAEEIIFNVQ--TTGASNDFEQATQMARAMVTEYGMSEKLGPVQY--EGNHAMLGAQ-SPQKSISEQTAYEIDEEVRSLLNEARNKAAEIIQSNRETHKLIAEALLKYETLDSTQIKALYETGK 627          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 9.043e-18
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGK 387
            +GGRVAEE+IF  +  TTGASNDF Q +++AR MV  +G S+K+G V     G +  LG Q S QK  S  TA  +D EVR L+  A  +A +II ++ +    +A+ L++ ET+D  +  +L+  GK
Sbjct:  505 MGGRVAEEIIFNVQ--TTGASNDFEQATQMARAMVTEYGMSEKLGPVQY--EGNHAMLGAQ-SPQKSISEQTAYEIDEEVRSLLNEARNKAAEIIQSNRETHKLIAEALLKYETLDSTQIKALYETGK 627          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.181e-17
Identity = 49/124 (39.52%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            ++ GRVAEE+IFG+  VT+GAS+DF   +++AR MV ++G SK++G V+          G+ MS++      T  +++ EV+ L+E AY  AK I+T H    H LAQ L+E ET+ G +   +
Sbjct:  537 SMAGRVAEELIFGDSEVTSGASSDFQNATKMARAMVTKYGMSKQLGFVSYNYEDD----GKSMSTE------TRLLIEQEVKSLLENAYNNAKTILTKHSKEHHVLAQALLEHETLTGAQIKKI 650          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGK 387
            ++GGRVAEE+IFG +++TTGAS+DF   +++A++MV +FG S+K+G +     G               S  T   ++ E+R L+  +Y RAK I+ TH      LA+ L+  ET+D +E + + ++GK
Sbjct:  596 SMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTG-------------KLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKE-IQIVLEGK 710          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGK 387
            ++GGRVAEE+IFG +++TTGAS+DF   +++A++MV +FG S+K+G +     G               S  T   ++ E+R L+  +Y RAK I+ TH      LA+ L+  ET+D +E + + ++GK
Sbjct:  596 SMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTG-------------KLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKE-IQIVLEGK 710          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGK 387
            ++GGRVAEE+IFG +++TTGAS+DF   +++A++MV +FG S+K+G +     G               S  T   ++ E+R L+  +Y RAK I+ TH      LA+ L+  ET+D +E + + ++GK
Sbjct:  654 SMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTG-------------KLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDAKE-IQIVLEGK 768          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.488e-17
Identity = 49/124 (39.52%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPG-GNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGR AE+VIFGE  +TTGA+ D  QV+ +ARQMV  FG S +IG  A+  P      +  +M ++   S   A+ +D+ V++++  AY  AK+ +  + + + KL  +L+EKET+ G+EF ++
Sbjct:  541 LGGRAAEDVIFGEPEITTGAAGDLQQVTEIARQMVTMFGMS-EIGPWALTDPAVKQNDVVLRMLARNSMSEKLAEDIDSCVKKIIGDAYEVAKKHVRNNREAIDKLVDVLLEKETLTGDEFRAI 663          
The following BLAST results are available for this feature:
BLAST of CX286896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
FTSH3_SYNY31.822e-1840.32Cell division protease ftsH homolog 3 OS=Synechocy... [more]
FTSH_AQUAE2.380e-1840.32Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH5_ORYSJ5.301e-1841.46Cell division protease ftsH homolog 5, mitochondri... [more]
FTSH_STRR69.043e-1842.19Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN9.043e-1842.19Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH4_ORYSJ1.181e-1739.52Cell division protease ftsH homolog 4, mitochondri... [more]
YMEL1_RAT2.631e-1736.43ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
YMEL1_MOUSE2.631e-1736.43ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
YMEL1_HUMAN2.631e-1736.43ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
FTSH6_ARATH4.488e-1739.52Cell division protease ftsH homolog 6, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC01002C10Rv Veg1 Citrus clementina cDNA clone C01002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286896 ID=CX286896; Name=CX286896; organism=Citrus clementina; type=EST; length=475bp
GCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAAAATGT
GACAACAGGAGCATCAAATGACTTCATGCAAGTTTCACGGGTAGCACGGC
AGATGGTTGAAAGATTTGGGTTTAGCAAGAAAATTGGACAAGTTGCCATT
GGAGGACCTGGTGGAAATCCATTCTTGGGTCAACAAATGTCTTCTCAGAA
AGACTACTCCATGGCAACTGCCGATGTGGTGGATGCAGAGGTCAGAGAAT
TGGTTGAAACAGCATATACAAGGGCCAAGCAGATCATCACAACCCACATT
GACATCCTTCACAAGCTTGCTCAACTCCTCATAGAGAAAGAAACCGTTGA
TGGAGAAGAATTTATGAGCCTTTTCATTGATGGAAAAGCTGAGCTATTTG
TTGCCTGATTGTACATGAAAGAATCAGAATTCAGATTCGTGTTGTATATG
CCCATGTAAAATCAAGTAATTAAAT
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