CX286896

Overview
NameCX286896
Unique NameCX286896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6 contig Ccv1_Contig6:1..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.861e-17
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGR AEE+IFG+  VTTGA  D  Q++ +ARQMV  FG S  IG  ++        +  +M ++   S   A+ +D+ V++L ++AY  A   I  + + + KL ++L+EKET+ G+EF ++
Sbjct:  544 LGGRAAEEIIFGDSEVTTGAVGDLQQITGLARQMVTTFGMS-DIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAI 665          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.909e-16
Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGR AEEVIFGE  VTTGA +D  Q++ +A+QMV  FG S +IG  ++        +  +M ++   S   A+ +D  V+ L + AY  A   I  + + + K+ ++L+EKET+ G+EF ++
Sbjct:  537 LGGRAAEEVIFGESEVTTGAVSDLQQITGLAKQMVTTFGMS-EIGPWSLMDSSEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFRAI 658          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16
Identity = 48/126 (38.10%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAI---GGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGR AEE+IFGE  VTTGA+ D  Q++ +A+QMV  FG S  IG  ++   G   G+  +  +M ++   S   A+ +D  V+ L + AY  A   I ++ + + K+ ++L+EKET+ G+EF ++
Sbjct:  531 LGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS-DIGPWSLMDSGAQSGDVIM--RMMARNSMSEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMDKIVEVLLEKETLSGDEFRAI 653          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.481e-16
Identity = 48/123 (39.02%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGRVAE++ FG+  +TTGA +D  +V++ A   + +FG S+K+GQV+   P      G+ M  +K YS ATA ++D EVR LV +AY R  +++T   + + K+ + L+EKE ++  + + L
Sbjct:  621 LGGRVAEQLFFGQ--ITTGAQDDLRKVTQSAYAQIVQFGMSEKLGQVSFDFPRQ----GETMV-EKPYSEATAQLIDEEVRCLVRSAYNRTLELLTQCREQVEKVGRRLLEKEVLEKADMIEL 736          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.464e-16
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGRV+EE+ FG   +TTGA +D  +V++ A   + +FG ++K+GQ++   P         M  +K YS ATA ++D EVR L+  AY R   ++T     + K+A LL+EKE +D  + + L
Sbjct:  628 LGGRVSEEIFFGR--ITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQG-----DMVLEKPYSEATARMIDDEVRILISDAYRRTVALLTEKKADVEKVALLLLEKEVLDKNDMVQL 743          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 8.464e-16
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGRV+EE+ FG   +TTGA +D  +V++ A   + +FG ++K+GQ++   P         M  +K YS ATA ++D EVR L+  AY R   ++T     + K+A LL+EKE +D  + + L
Sbjct:  629 LGGRVSEEIFFGR--ITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQG-----DMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVEL 744          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.464e-16
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGRV+EE+ FG   +TTGA +D  +V++ A   + +FG ++K+GQ++   P         M  +K YS ATA ++D EVR L+  AY R   ++T     + K+A LL+EKE +D  + + L
Sbjct:  630 LGGRVSEEIFFGR--ITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQG-----DMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVEL 745          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQ----KDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEE 360
            +GGRVAEE+IFG++ VTTGA++D  + +++A QMV+ FG S K+G           F  Q   S      D +  TA+++DAE+  +++ +Y RAK I+ T       LA+ L+E ET+  +E
Sbjct:  518 MGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSDKVGL--------RDFTAQDNESALVKVSDLAPQTAELIDAEINRVLQESYKRAKVILETKKKEHQLLAEALLEYETLSADE 632          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.463e-15
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEE 360
            +GGRVAEE+IFGE+NVTTGA ND    + +A+ MV   G S  IG V +               ++  S+     +DAEV +L+  AY R K+++  H   LH LA  L+E+ET+  +E
Sbjct:  657 MGGRVAEELIFGEDNVTTGARNDLHTATELAQYMVSNCGMSDAIGPVHV---------------KERPSVEMQSRIDAEVVKLLREAYGRVKRLLKKHEKQLHALANALLERETLTADE 760          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.216e-15
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGR AEEV+ G+  ++TGA ND  +V+++    V  +GFS+K+G ++       P         K YS  TA ++D EVRE V  AY +  ++I  H D + ++A+LL+EKE +  ++ + +
Sbjct:  641 LGGRAAEEVLIGK--ISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSF------PQREDGFEMSKPYSSQTASIIDTEVREWVAKAYEKTVELIKQHKDQVAQIAELLLEKEVLHQDDLVQV 755          
The following BLAST results are available for this feature:
BLAST of CX286896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
FTSH2_ARATH5.861e-1738.21Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH2.909e-1638.21Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ORYSJ4.962e-1638.10Cell division protease ftsH homolog 2, chloroplast... [more]
AFG31_MOUSE6.481e-1639.02AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
AFG32_MOUSE8.464e-1638.21AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_HUMAN8.464e-1638.21AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
AFG32_BOVIN8.464e-1638.21AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
YME1_CAEEL1.886e-1538.21Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
FTSH9_ORYSJ2.463e-1539.50Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH3_ORYSJ3.216e-1535.77Cell division protease ftsH homolog 3, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionC01002C10Rv Veg1 Citrus clementina cDNA clone C01002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286896 ID=CX286896; Name=CX286896; organism=Citrus clementina; type=EST; length=475bp
GCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAAAATGT
GACAACAGGAGCATCAAATGACTTCATGCAAGTTTCACGGGTAGCACGGC
AGATGGTTGAAAGATTTGGGTTTAGCAAGAAAATTGGACAAGTTGCCATT
GGAGGACCTGGTGGAAATCCATTCTTGGGTCAACAAATGTCTTCTCAGAA
AGACTACTCCATGGCAACTGCCGATGTGGTGGATGCAGAGGTCAGAGAAT
TGGTTGAAACAGCATATACAAGGGCCAAGCAGATCATCACAACCCACATT
GACATCCTTCACAAGCTTGCTCAACTCCTCATAGAGAAAGAAACCGTTGA
TGGAGAAGAATTTATGAGCCTTTTCATTGATGGAAAAGCTGAGCTATTTG
TTGCCTGATTGTACATGAAAGAATCAGAATTCAGATTCGTGTTGTATATG
CCCATGTAAAATCAAGTAATTAAAT
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