CX286896

Overview
NameCX286896
Unique NameCX286896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6 contig Ccv1_Contig6:1..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 44/121 (36.36%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFM 366
            LGGR AEEV+ G   ++TGA ND  +V+++    V  +GFS+K+G ++       P         K YS  TA ++D EVRE V  AY +  ++IT H + + K+A++L+EKE +  ++ +
Sbjct:  656 LGGRAAEEVLIGR--ISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSF------PQRDDGFEMTKPYSNQTASIIDDEVREWVGKAYKKTVELITEHKEQVAKIAEMLLEKEVLHQDDLV 768          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.085e-14
Identity = 43/131 (32.82%), Postives = 77/131 (58.78%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL 396
            +GGR AEE+++G++ +T+GA ND  + ++VAR+MV  FG S +IG V++             +   + S AT  +V++E++ L+E +Y R+  ++ +H   L  LA  L++ E +  EE M+  + G  +L
Sbjct:  586 MGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSDRIGPVSL------------EAEMDNLSPATRALVESEIKSLLEASYERSLSLLKSHKKELDALATALVDYEFLTAEE-MNRVVKGDRDL 703          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.556e-14
Identity = 40/119 (33.61%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEE 360
            +GGR AE +I+G+EN++TGAS+D  + +++AR+MV  +G S  +G +       NPFLG+   S+  +    A  +D E+R+++  +   A + I  ++++L  +   L+E ET+  EE
Sbjct:  530 MGGRAAEMIIYGKENISTGASDDISRATKIARKMVTEWGMS-ALGPIKYEEDTENPFLGRDY-SKGTFGSKMAHEIDLEIRKIISASEEIAIKAIEQNLELLELIKDSLLENETIVAEE 646          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.556e-14
Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFI 378
            +GGRVAEE+IFG +++TTGAS+D  Q + +A+ MV   G S+ IG V I               ++  S      +DAEV +L+  AY R K ++  H   LH LA  L+E ET+  E+   + +
Sbjct:  676 MGGRVAEELIFGLDHITTGASSDLSQATELAQYMVSSCGMSEAIGPVHI---------------KERPSSDMQSRIDAEVVKLLREAYERVKSLLKRHEKQLHTLANALLEYETLTAEDIKRILL 785          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.922e-14
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETV 348
            A+GGR AEE I+G   +TTGAS+DF + + +AR MV + G S K+GQV        P  G   S+ K YS  TA  +D E+  ++E  Y +AK II ++   L  L + L+  ET+
Sbjct:  549 AMGGRAAEEEIYGNLEITTGASSDFYKATNIARAMVTQLGMS-KLGQVQY-----VPSQGTLPSNVKLYSEQTAKDIDNEINFIIEEQYKKAKTIIKSNRKELELLVEALLIAETI 658          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.035e-13
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEE 360
            +GG++AEE+I+G++N T+G  +D    +  AR MV ++G S  +G V +              + + +S    D+ D EV EL++ +  RA++++T     LH+LAQ LIE ET+D  E
Sbjct:  596 MGGKIAEELIYGKDNTTSGCGSDLQSATGTARAMVTQYGMSDDVGPVNLS------------ENWESWSNKIRDIADNEVIELLKDSEERARRLLTKKNVELHRLAQGLIEYETLDAHE 702          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 41/123 (33.33%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            +GGRV EE++FG + VT GA++DF + + +A+ MV+RFGFS KIG   I             +  +    AT D++D EV +L+  + TR + ++++       LA+ L+  ET+  +E +++
Sbjct:  481 MGGRVGEELVFGADKVTNGAADDFRKATILAQNMVKRFGFSSKIGPRVIPD-----------TQDEQLGEATRDLIDKEVDQLLNDSLTRVRTLLSSQSKQHKLLAEALLHFETLTKDEVLAV 592          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.932e-13
Identity = 43/124 (34.68%), Postives = 72/124 (58.06%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            ALGGRV+EE+ F   +VT+GA +DF +V+++A  MV   G S KIG ++     GN          K +S  TA  +D EV+ +V+ A+    +++T ++D +  +A+ L+ KE +  E+ + L
Sbjct:  613 ALGGRVSEELHF--PSVTSGAHDDFKKVTQMANAMVTSLGMSPKIGYLSFDQNDGN------FKVNKPFSNKTARTIDLEVKSIVDDAHRACTELLTKNLDKVDLVAKELLRKEAITREDMIRL 728          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETV 348
            A+GGR AEE I+G   +TTGAS+DF + + +AR MV + G S K+GQV        P  G      K +S  TA  +D E+  ++E  Y +A+ II T+   L  L + L+  ET+
Sbjct:  546 AMGGRAAEEEIYGPLEITTGASSDFYKATNIARAMVTQLGMS-KLGQVQY-----VPSQGTVPPGTKLFSEQTAKDIDFEINAIIEEQYKKARTIIKTNRKELELLVEALLIAETI 655          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEE 360
            LGGR AE+V+ G   ++TGA ND  +V+++    V  +GFS KIG ++        F  ++    K YS  T  ++D EVRE V  AY R  ++I  H + + ++A+LL+EKE +  ++
Sbjct:  648 LGGRAAEQVLIGR--ISTGAQNDLEKVTKMTYAQVAVYGFSDKIGLLS--------FPQREDEFSKPYSNRTGAMIDEEVREWVGKAYKRTVELIEEHKEQVAQIAELLLEKEVLHQDD 756          
The following BLAST results are available for this feature:
BLAST of CX286896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
FTSH8_ORYSJ5.486e-1536.36Cell division protease ftsH homolog 8, mitochondri... [more]
YME1_SCHPO2.085e-1432.82Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
FTSH_MYCPU3.556e-1433.61Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSHB_ARATH3.556e-1436.80Cell division protease ftsH homolog 11, chloroplas... [more]
FTSH_MYCGE7.922e-1440.52Cell division protease ftsH homolog OS=Mycoplasma ... [more]
YME1_YEAST1.035e-1334.45Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
YME1_SCHMA1.351e-1333.33Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
AFG3_YEAST3.932e-1334.68Mitochondrial respiratory chain complexes assembly... [more]
FTSH_MYCPN5.135e-1338.79Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSHA_ARATH5.135e-1336.13Cell division protease ftsH homolog 10, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC01002C10Rv Veg1 Citrus clementina cDNA clone C01002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286896 ID=CX286896; Name=CX286896; organism=Citrus clementina; type=EST; length=475bp
GCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAAAATGT
GACAACAGGAGCATCAAATGACTTCATGCAAGTTTCACGGGTAGCACGGC
AGATGGTTGAAAGATTTGGGTTTAGCAAGAAAATTGGACAAGTTGCCATT
GGAGGACCTGGTGGAAATCCATTCTTGGGTCAACAAATGTCTTCTCAGAA
AGACTACTCCATGGCAACTGCCGATGTGGTGGATGCAGAGGTCAGAGAAT
TGGTTGAAACAGCATATACAAGGGCCAAGCAGATCATCACAACCCACATT
GACATCCTTCACAAGCTTGCTCAACTCCTCATAGAGAAAGAAACCGTTGA
TGGAGAAGAATTTATGAGCCTTTTCATTGATGGAAAAGCTGAGCTATTTG
TTGCCTGATTGTACATGAAAGAATCAGAATTCAGATTCGTGTTGTATATG
CCCATGTAAAATCAAGTAATTAAAT
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