CX286896

Overview
NameCX286896
Unique NameCX286896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6 contig Ccv1_Contig6:1..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12
Identity = 43/124 (34.68%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            +LGGRV+EE+ F   +VT+GAS+DF +V+ +A  MV   G S KIG V       N          K +S  T D++D+EV  +V+  + R  +++    + + K+AQ+L++KE +  E+ + L
Sbjct:  668 SLGGRVSEELHF--PSVTSGASDDFKKVTSMATAMVTELGMSDKIGWV-------NYQKRDDSDLTKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMIDL 782          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12
Identity = 40/123 (32.52%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            LGGR AE+V+ G+  ++TGA ND  +V+++    V  +GFS K+G ++       P         K YS  T  ++D EVR+ V  AY R  +++  H   + ++A+LL+EKE +  ++ + +
Sbjct:  642 LGGRAAEQVLIGK--ISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSF------PPRDDGYDFSKPYSNKTGAIIDEEVRDWVAKAYERTVELVEEHKVKVAEIAELLLEKEVLHQDDLLKI 756          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEF 363
            L GR AE V FGE  V+TGA ND  + + + R+M+  +G S+K   VA+   G       Q++  ++YS  T   VD EV  ++   Y     ++T   ++L  +A  L+E+ET++ +EF
Sbjct:  459 LSGRAAEFVAFGE--VSTGAGNDISRATDIVRKMITDYGMSEKFQNVALTRRGTGYLAEPQLA--REYSECTQQYVDEEVARVLAERYRAVVALLTEKKELLEYIATRLLERETIERDEF 574          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            ALGGR AE + F    VT+GA +D  +V+R+A  MV++FG +  IG V+   P      G     ++ +S     ++D E R LV  AY   ++++  ++D L  LA  L+EKE ++ E+  +L
Sbjct:  592 ALGGRAAEAISFSR--VTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSF--PEAQE--GLVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEAL 709          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 40/129 (31.01%), Postives = 69/129 (53.49%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKA 390
            LGGR AEEV    E ++TGASND  + + + + MV  +G S   G + +     N FLG    S +++S  TA+ +D  ++ L+E  Y   KQ ++ + + +  + + L +KE + GE    +  + +A
Sbjct:  491 LGGRAAEEVFL--EEISTGASNDLERATDIIKGMVSYYGMSSVSGLMVL-EKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYQHVKQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEA 616          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 42/124 (33.87%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            ALGGR AE + F    VT+GA +D  +V+R+A  MV++FG +  IG V+   P      G     ++ +S     ++D E + LV  AY   ++++  ++D L  LA  L+EKE ++ E+  +L
Sbjct:  629 ALGGRAAEAISFSR--VTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSF--PEAQE--GLMGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEAL 746          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            ALGGR +E + F E  VT+GA +D  +V+R+A  MV++FG +  IG ++   P      G     ++ +S     ++D E R LV  AY   ++++  ++D L  LA  L+EKE ++ E+  +L
Sbjct:  629 ALGGRASEALSFNE--VTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISF--PEAQE--GLMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKLQALANALLEKEVINYEDIEAL 746          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.157e-11
Identity = 38/118 (32.20%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGE 357
            LGGR AE+V    E ++TGASND  + + + + MV  +G S   G + +     N FLG    S +++S  TA+ +D  ++ L+E  Y   KQ ++ + + +  + + L +KE + GE
Sbjct:  491 LGGRAAEDVFL--EEISTGASNDLERATDIIKGMVSYYGMSSVSGLMVL-EKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYKHVKQTLSDYREAIEIMVKELFDKEVITGE 605          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.157e-11
Identity = 39/118 (33.05%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGE 357
            LGGR AE+V   E  ++TGASND  + + + + MV  +G S   G + +     N FLG    S +++S   A+ +D+ ++ L+E  Y   KQ ++ + D +  +   L EKE + GE
Sbjct:  497 LGGRAAEDVFLQE--ISTGASNDLERATDIIKGMVSYYGMSDVSGLMVL-EKQRNSFLGGGFGSGREFSEKMAEEMDSFIKNLLEERYVHVKQTLSDYKDAIEVMVNELFEKEVITGE 611          
The following BLAST results are available for this feature:
BLAST of CX286896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RCA1_YEAST1.494e-1234.68Mitochondrial respiratory chain complexes assembly... [more]
FTSH3_ARATH1.494e-1232.52Cell division protease ftsH homolog 3, mitochondri... [more]
FTSH_TREPA3.328e-1234.17Cell division protease ftsH homolog OS=Treponema p... [more]
SPG7_RAT5.677e-1234.68Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
FTSH_HELPJ5.677e-1231.01Cell division protease ftsH homolog OS=Helicobacte... [more]
SPG7_MOUSE7.415e-1233.87Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
SPG7_HUMAN7.415e-1233.87Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
FTSH_HELPY2.157e-1132.20Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELFE2.157e-1133.05Cell division protease ftsH homolog OS=Helicobacte... [more]

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Properties
Property NameValue
Genbank descriptionC01002C10Rv Veg1 Citrus clementina cDNA clone C01002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286896 ID=CX286896; Name=CX286896; organism=Citrus clementina; type=EST; length=475bp
GCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAAAATGT
GACAACAGGAGCATCAAATGACTTCATGCAAGTTTCACGGGTAGCACGGC
AGATGGTTGAAAGATTTGGGTTTAGCAAGAAAATTGGACAAGTTGCCATT
GGAGGACCTGGTGGAAATCCATTCTTGGGTCAACAAATGTCTTCTCAGAA
AGACTACTCCATGGCAACTGCCGATGTGGTGGATGCAGAGGTCAGAGAAT
TGGTTGAAACAGCATATACAAGGGCCAAGCAGATCATCACAACCCACATT
GACATCCTTCACAAGCTTGCTCAACTCCTCATAGAGAAAGAAACCGTTGA
TGGAGAAGAATTTATGAGCCTTTTCATTGATGGAAAAGCTGAGCTATTTG
TTGCCTGATTGTACATGAAAGAATCAGAATTCAGATTCGTGTTGTATATG
CCCATGTAAAATCAAGTAATTAAAT
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