CX286896
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12 Identity = 43/124 (34.68%), Postives = 71/124 (57.26%), Query Frame = 1 Query: 1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 +LGGRV+EE+ F +VT+GAS+DF +V+ +A MV G S KIG V N K +S T D++D+EV +V+ + R +++ + + K+AQ+L++KE + E+ + L Sbjct: 668 SLGGRVSEELHF--PSVTSGASDDFKKVTSMATAMVTELGMSDKIGWV-------NYQKRDDSDLTKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMIDL 782
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12 Identity = 40/123 (32.52%), Postives = 69/123 (56.10%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 LGGR AE+V+ G+ ++TGA ND +V+++ V +GFS K+G ++ P K YS T ++D EVR+ V AY R +++ H + ++A+LL+EKE + ++ + + Sbjct: 642 LGGRAAEQVLIGK--ISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSF------PPRDDGYDFSKPYSNKTGAIIDEEVRDWVAKAYERTVELVEEHKVKVAEIAELLLEKEVLHQDDLLKI 756
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12 Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEF 363 L GR AE V FGE V+TGA ND + + + R+M+ +G S+K VA+ G Q++ ++YS T VD EV ++ Y ++T ++L +A L+E+ET++ +EF Sbjct: 459 LSGRAAEFVAFGE--VSTGAGNDISRATDIVRKMITDYGMSEKFQNVALTRRGTGYLAEPQLA--REYSECTQQYVDEEVARVLAERYRAVVALLTEKKELLEYIATRLLERETIERDEF 574
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12 Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 1 Query: 1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 ALGGR AE + F VT+GA +D +V+R+A MV++FG + IG V+ P G ++ +S ++D E R LV AY ++++ ++D L LA L+EKE ++ E+ +L Sbjct: 592 ALGGRAAEAISFSR--VTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSF--PEAQE--GLVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEAL 709
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12 Identity = 40/129 (31.01%), Postives = 69/129 (53.49%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKA 390 LGGR AEEV E ++TGASND + + + + MV +G S G + + N FLG S +++S TA+ +D ++ L+E Y KQ ++ + + + + + L +KE + GE + + +A Sbjct: 491 LGGRAAEEVFL--EEISTGASNDLERATDIIKGMVSYYGMSSVSGLMVL-EKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYQHVKQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEA 616
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12 Identity = 42/124 (33.87%), Postives = 69/124 (55.65%), Query Frame = 1 Query: 1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 ALGGR AE + F VT+GA +D +V+R+A MV++FG + IG V+ P G ++ +S ++D E + LV AY ++++ ++D L LA L+EKE ++ E+ +L Sbjct: 629 ALGGRAAEAISFSR--VTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSF--PEAQE--GLMGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEAL 746
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12 Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 1 Query: 1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372 ALGGR +E + F E VT+GA +D +V+R+A MV++FG + IG ++ P G ++ +S ++D E R LV AY ++++ ++D L LA L+EKE ++ E+ +L Sbjct: 629 ALGGRASEALSFNE--VTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISF--PEAQE--GLMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKLQALANALLEKEVINYEDIEAL 746
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 2.157e-11 Identity = 38/118 (32.20%), Postives = 65/118 (55.08%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGE 357 LGGR AE+V E ++TGASND + + + + MV +G S G + + N FLG S +++S TA+ +D ++ L+E Y KQ ++ + + + + + L +KE + GE Sbjct: 491 LGGRAAEDVFL--EEISTGASNDLERATDIIKGMVSYYGMSSVSGLMVL-EKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYKHVKQTLSDYREAIEIMVKELFDKEVITGE 605
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.157e-11 Identity = 39/118 (33.05%), Postives = 64/118 (54.24%), Query Frame = 1 Query: 4 LGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGE 357 LGGR AE+V E ++TGASND + + + + MV +G S G + + N FLG S +++S A+ +D+ ++ L+E Y KQ ++ + D + + L EKE + GE Sbjct: 497 LGGRAAEDVFLQE--ISTGASNDLERATDIIKGMVSYYGMSDVSGLMVL-EKQRNSFLGGGFGSGREFSEKMAEEMDSFIKNLLEERYVHVKQTLSDYKDAIEVMVNELFEKEVITGE 611 The following BLAST results are available for this feature:
BLAST of CX286896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CX286896 ID=CX286896; Name=CX286896; organism=Citrus clementina; type=EST; length=475bpback to top |