CX286898

Overview
NameCX286898
Unique NameCX286898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PIN4_ASPFU (Peptidyl-prolyl cis-trans isomerase pin4 OS=Aspergillus fumigatus GN=pin4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.175e-12
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 3
Query:  207 LGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAP----FKSTHGYHIILCEGRK 521
            L   T +  RHILCEK  K  EA +KL++G          A+F  +A EYSE    ++GG LGW  RG +   F++ A+      T+ P     K+  GYHII+ EGRK
Sbjct:   32 LKPATSINVRHILCEKFSKKEEALEKLRNG----------AKFDDVAREYSE-DKARQGGSLGWKVRGSLNADFEKAAYELEPSTTANPKYVEVKTGFGYHIIMVEGRK 129          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PRSA_GEOKA (Foldase protein prsA OS=Geobacillus kaustophilus GN=prsA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.005e-12
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTHGYHII 503
            ++A HIL + +    E   KL  G           +FSK+A EYS+ P S   GGDLGWF  GKM   F+E A+   VG  S P K+ +GYHII
Sbjct:  136 IRASHILVKDEKTAKEVKAKLDKG----------EDFSKLAKEYSQDPGSASNGGDLGWFGPGKMVKEFEEAAYKLKVGEVSDPVKTDYGYHII 219          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PRSA_OCEIH (Foldase protein prsA OS=Oceanobacillus iheyensis GN=prsA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.833e-12
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  219 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYS-ECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTHGYHII 503
            T ++A+HIL E +  + E  +K++DG           +F ++A EYS +  S + GGDLG+F  G M   F+E AF+   G  S P +STHG HII
Sbjct:  138 TEIQAQHILLENEEDVAEVQQKIEDG----------EDFGELAQEYSTDTGSAENGGDLGYFSAGSMVPEFEEAAFSLEAGEISDPVQSTHGTHII 223          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PRSA_BACHD (Foldase protein prsA OS=Bacillus halodurans GN=prsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTHGYHIILCEGRKN 524
            V+A HIL E +    E   +L+ G           +F+++A+EYS  PS +   GDLG+F +G M   F+E AFN  +   S P +ST+GYHIIL   RK+
Sbjct:  158 VEASHILVEDEETAEEVLDRLEAG----------DDFAELASEYSVDPSAEANNGDLGFFGKGDMVPEFEEAAFNMEIDEVSEPVESTYGYHIILVTDRKD 248          
BLAST of CX286898 vs. ExPASy Swiss-Prot
Match: PRSA_GEOSW (Foldase protein prsA OS=Geobacillus sp. (strain WCH70) GN=prsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  225 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTHGYHII 503
            ++A HIL + +    E   KL  G           +F+K+A +YS+ P S   GGDLGWF  GKM   F++ A+   VG  S P K+ +GYHII
Sbjct:  136 IRASHILVKDEKTAEEIKTKLDKG----------EDFAKLAKQYSQDPGSAPNGGDLGWFGPGKMVKEFEDAAYKLKVGQVSDPVKTDYGYHII 219          
The following BLAST results are available for this feature:
BLAST of CX286898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PIN4_ASPFU1.175e-1239.45Peptidyl-prolyl cis-trans isomerase pin4 OS=Asperg... [more]
PRSA_GEOKA2.005e-1242.55Foldase protein prsA OS=Geobacillus kaustophilus G... [more]
PRSA_OCEIH5.833e-1239.58Foldase protein prsA OS=Oceanobacillus iheyensis G... [more]
PRSA_BACHD7.618e-1239.60Foldase protein prsA OS=Bacillus halodurans GN=prs... [more]
PRSA_GEOSW3.781e-1139.36Foldase protein prsA OS=Geobacillus sp. (strain WC... [more]

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Properties
Property NameValue
Genbank descriptionC01002C12Rv Veg1 Citrus clementina cDNA clone C01002C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286898 ID=CX286898; Name=CX286898; organism=Citrus clementina; type=EST; length=538bp
TAGAGGTTGGCAGTTGGCTGCTGGTTCTTTTGTGTTTCTGAGTTACTCTG
TTGAACCCTTTCGATCGAAGTCAAATCTTTTAAGATTTTTCACCTATGGG
AAAGGATTCTAAACCAAAGGATGGAGGGAAGGGTAAAGGAAAACAGGCAG
CTGGTGGAGCTGATGATTCAAAGGGTAAAGGAAAAGGCGGGAAGTCAGCT
GATGGCCTCGGCACCTGCACATATGTCAAAGCACGACACATCTTATGTGA
GAAGCAAGGGAAGATCAATGAGGCATACAAGAAGCTGCAAGATGGTTGGC
TGAGCAATGGGGACAAGGTTCCACAAGCTGAGTTTTCAAAGATAGCTGCA
GAATACTCAGAATGCCCGTCAGGAAAGAAGGGTGGAGATCTTGGATGGTT
TCCACGTGGAAAGATGGCTGGCCCATTTCAGGAAGTTGCCTTCAATACTC
CTGTTGGAGTTACCAGTGCACCTTTCAAGTCTACGCATGGATACCACATA
ATCTTGTGTGAAGGGAGGAAGAATTGATCGGAAACAGT
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