CX286909

Overview
NameCX286909
Unique NameCX286909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286909_ssr405 microsatellite CX286909_ssr405:405..425. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:20..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 2 
Query:  434 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            EEK YRGVR+RPWG++AAEIRD  RKG RVWLGTFD
Sbjct:   78 EEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFD 113
[Close]
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 26/37 (70.27%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:  431 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            ++ KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+
Sbjct:  112 VKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFE 148
[Close]
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 36/99 (36.36%), Postives = 51/99 (51.52%), Query Frame = 2 
Query:  245 KPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            +PSS+      +   +V I    SF  +    V  +  +PV+                     + KHYRGVR+RPWG++AAEIRDP + G+RVWLGTF+
Sbjct:   96 EPSSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAA---------------VTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFE 179
The following BLAST results are available for this feature:
BLAST of CX286909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ERF94_ARATH2.925e-1180.56Ethylene-responsive transcription factor ERF094 OS... [more]
EF101_ARATH4.989e-1170.27Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH8.510e-1136.36Ethylene-responsive transcription factor 1A OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC01002D11Rv Veg1 Citrus clementina cDNA clone C01002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286909 ID=CX286909; Name=CX286909; organism=Citrus clementina; type=EST; length=542bp
ATTTCCATTTACATTTCATCTTACCTTCAATATGGCATCTCTGAATGAAG
CATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTC
ACTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCC
TCAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAA
CAGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCT
TCAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCAT
ACCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATG
ATGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCT
GATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAG
AGGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACC
CGAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATA
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