CX286910

Overview
NameCX286910
Unique NameCX286910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length507
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9976 contig Ccv1_Contig9976:306..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_SCHPO (Translationally-controlled tumor protein homolog OS=Schizosaccharomyces pombe GN=p23fy PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.605e-11
Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = -2
Query:  201 VVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 503
            V ++V +FRL    +FDKK +++Y+K ++K +  +L E   ER  +F+KN  G  K +L+   D  F++GESM  D  +V   Y+E    P  ++  D L   K
Sbjct:   65 VNNLVYSFRLSPT-SFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFFKDGLVSEK 167          
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_LABRO (Translationally-controlled tumor protein homolog OS=Labeo rohita GN=tpt1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.605e-11
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = -2
Query:  198 VDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 500
            VDIV   +LQE  ++DKK +  Y+K ++K +  KL E   +R + F  N     K +L  + + QFF GESM+ DG +    ++E    P  L+  D L+  KC
Sbjct:   69 VDIVLNHKLQET-SYDKKSYTAYIKDYMKAVKAKLQEVAPDRVDPFMANAPAEVKKILGNIKNFQFFTGESMNPDGMIGLLDFREDGVTPYMLFFKDGLEIEKC 171          
The following BLAST results are available for this feature:
BLAST of CX286910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TCTP_SCHPO9.605e-1134.62Translationally-controlled tumor protein homolog O... [more]
TCTP_LABRO9.605e-1135.58Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionC01002D12Rv Veg1 Citrus clementina cDNA clone C01002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286910 ID=CX286910; Name=CX286910; organism=Citrus clementina; type=EST; length=507bp
TTTTTTTTTTTTTTTTTTTCAAACCATAAAACCCAATAATTAAGAGCAGA
AAAACATATTGTTTATGTCAAAATAAAAACTAAAAAACAGCAAGCACAAG
TCCCGAGTAAACCAGCACAAAAGATACATAAAAATAACCGCGGGCAATAA
TTAAAATTAGAACTACAGCAGGCACTTCCTCTTCGAAGCCCAGCTTAGCA
CTTCACCTCCTTCAATGCATCAGCCATATACAAAAATGTTGGGTCGGTCG
CACCTTCCTTGTAGTAAGCAAAGACAAGACAGCCATCATCATGCATGCTC
TCCCCAACAAAGAATTGAAGGTCACTGAGCTTCGAGAGCAAGAACTTGGT
CGCTCCCTCAATATTCTTCTTAAATATCTCCTGCCTCTCCTCACTCAGCT
TGGGCGTCAGCAACTTGATGAATCTCTTCATGTATGTTACAAACGGCTTC
TTGTCAAAAGCGGGTTGCTCCTGTAGCCTGAATGTGTCGACAATGTCAAC
CACCTTC
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