CX286918

Overview
NameCX286918
Unique NameCX286918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286918 vs. ExPASy Swiss-Prot
Match: ALDR_MOUSE (Aldose reductase OS=Mus musculus GN=Akr1b1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = -1
Query:  244 CKVKGMNVTAYSPLGAVGTRWGSNQ---VMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGIFDWELTDDD 492
            C  KG+ VTAYSPLG+    W   +   ++E+  +K IA  + KT AQV +R+ +++ + V+ +S+ P R+ +NL +FD+E++ +D
Sbjct:  200 CHSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKYNKTTAQVLIRFPIQRNLVVIPKSVTPVRIAENLKVFDFEVSSED 285          
BLAST of CX286918 vs. ExPASy Swiss-Prot
Match: A1A1B_DANRE (Alcohol dehydrogenase [NADP+] B OS=Danio rerio GN=akr1a1b PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 35/125 (28.00%), Postives = 68/125 (54.40%), Query Frame = -1
Query:  160 CKVKGMNVTAYSPLGAVGTRWGSNQ---VMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGIFDWELTDDDYDKINQIAQ--RRLIPSDFLIS---------PHGPFKTP 492
            C+ +G+ +TAYSPLG+    W       ++E  A+  +A+ + KT AQ+ +RW  ++GV  + +S+   R+K+N+ +FD+ L  ++  ++  + +  R ++P+  +           PH PF  P
Sbjct:  199 CRDRGLVMTAYSPLGSPDRAWKHPDEPVLLEEPAIAALAKKYNKTPAQIIIRWQTQRGVVTIPKSITQSRIKENIQVFDFTLESEEMSQVTALHRGWRYIVPTITVDGKSVPRDAGHPHYPFNDP 323          
BLAST of CX286918 vs. ExPASy Swiss-Prot
Match: YTBE_BACSU (Uncharacterized oxidoreductase ytbE OS=Bacillus subtilis GN=ytbE PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 31/99 (31.31%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  196 CKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGIFDWELTDDDYDKINQIAQRRLIPSD 492
            C+ +G+ + A+SPL          Q++++  L  IA+ + K+VAQ+ LRW ++ G+  + +S    R+K+N  +FD+ELT DD ++I+ + +   +  D
Sbjct:  183 CQNQGIQMEAWSPLM-------QGQLLDHPVLADIAQTYNKSVAQIILRWDLQHGIITIPKSTKEHRIKENASVFDFELTQDDMNRIDALNENLRVGPD 274          
BLAST of CX286918 vs. ExPASy Swiss-Prot
Match: AKCL2_PIG (1,5-anhydro-D-fructose reductase OS=Sus scrofa GN=AKR1E2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 31/86 (36.05%), Postives = 60/86 (69.77%), Query Frame = -1
Query:  244 CKVKGMNVTAYSPLGAVGTRWGSNQ---VMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGIFDWELTDDD 492
            C+ + ++VTAY PLG      GS++   ++E+  ++ IA+ HGK+ AQ+ +R+ +++ V V+ +S+NP+R+ +N  +FD+EL++ D
Sbjct:  191 CQSRNVSVTAYRPLG------GSSEGVPLLEDPVIQTIAQKHGKSAAQILIRFQIQRNVIVIPKSVNPKRILENFQVFDFELSEQD 270          
BLAST of CX286918 vs. ExPASy Swiss-Prot
Match: AK1A1_PONAB (Alcohol dehydrogenase [NADP+] OS=Pongo abelii GN=AKR1A1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 32/102 (31.37%), Postives = 61/102 (59.80%), Query Frame = -1
Query:  202 CKVKGMNVTAYSPLGAVGTRWGSNQ---VMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGIFDWELTDDDYDKINQIAQ--RRLIP 492
            C+ +G+ VTAYSPLG+    W       ++E   +  +AE +G + AQ+ LRW V++ V  + +S+ P R+ QN+ +FD+  + ++  ++N + +  R ++P
Sbjct:  200 CQARGLAVTAYSPLGSSDRAWRDPDEPVLLEEPVVLALAEKYGGSPAQILLRWQVQRKVICIPKSITPSRILQNIKVFDFTFSPEEMKQLNALNKNWRHIVP 301          
The following BLAST results are available for this feature:
BLAST of CX286918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ALDR_MOUSE1.806e-1137.21Aldose reductase OS=Mus musculus GN=Akr1b1 PE=1 SV... [more]
A1A1B_DANRE1.806e-1128.00Alcohol dehydrogenase [NADP+] B OS=Danio rerio GN=... [more]
YTBE_BACSU3.081e-1131.31Uncharacterized oxidoreductase ytbE OS=Bacillus su... [more]
AKCL2_PIG3.081e-1136.051,5-anhydro-D-fructose reductase OS=Sus scrofa GN=... [more]
AK1A1_PONAB3.081e-1131.37Alcohol dehydrogenase [NADP+] OS=Pongo abelii GN=A... [more]

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Properties
Property NameValue
Genbank descriptionC01002E08Rv Veg1 Citrus clementina cDNA clone C01002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286918 ID=CX286918; Name=CX286918; organism=Citrus clementina; type=EST; length=492bp
CTCGTGCCGATTTTTTTTTACAAAAGTGTTTGCATTTCCATCATTATTAA
AATTCAAATTATAGAACCTTACATTTGAAATTAATTATTACATTTCATAT
AATTTTTGGAATATTTGTATTTCGAAAGTCTGAAACTAGCCATCATTCCA
CAGCTCCTCAGGGGTCTTGAATGGTCCATGAGGGGAAATAAGGAAATCAC
TTGGTATCAATCTACGCTGTGCGATTTGATTAATCTTGTCATAGTCGTCA
TCAGTTAATTCCCAATCGAAGATCCCCAGGTTCTGCTTCAATCTCTCTGG
ATTGAGGCTCCTGACAACAACTGTCACTCCTTGCTCAACTATCCATCTAA
GAGAAACCTGAGCGACAGTCTTGCCATGAGCCTCTGCAATCTGCTTTAGT
GCTTCATTCTCCATGACTTGATTGCTTCCCCATCTTGTCCCTACGGCTCC
CAAAGGTGAGTACGCCGTGACATTCATGCCCTTGACCTTGCA
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