CX286925

Overview
NameCX286925
Unique NameCX286925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286925 vs. ExPASy Swiss-Prot
Match: SAP10_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Oryza sativa subsp. japonica GN=SAP10 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-15
Identity = 46/144 (31.94%), Postives = 68/144 (47.22%), Query Frame = 2
Query:  188 GPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 619
            G  +C   CGFFGS AT  +CSKCYK    +Q Q +    +     ++TS    ++       D      E   +   P+  ++             +RC +C+K+VGL GF CRCG ++C +H       C FDY+ A R+AI
Sbjct:   14 GAAMCAAGCGFFGSAATDGLCSKCYKQ---QQPQPRHLIGTAAGDSDKTSLKVVADLSTLVIKDNSGVGGEGTTVMAPPATVTKAK-----------NRCKACRKKVGLLGFPCRCGGMFCGAHA------CAFDYKAAGREAI 137          
BLAST of CX286925 vs. ExPASy Swiss-Prot
Match: SAP15_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 15 OS=Oryza sativa subsp. japonica GN=SAP15 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.446e-13
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 2
Query:  479 SRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 619
            +RC+ C+KRVGLTGF+CRCG L+C  HR+S+ H C FDY+TA R+ I
Sbjct:  113 NRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEI 159          
BLAST of CX286925 vs. ExPASy Swiss-Prot
Match: SAP14_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 14 OS=Oryza sativa subsp. japonica GN=SAP14 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  431 ASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 619
            AS  S S     +   +RC++C+++VGLTGFKCRCG  +C  HRY+D+H C FDY+++ R+ I
Sbjct:  159 ASYSSSSPATGEQPEANRCATCRRKVGLTGFKCRCGGTFCGGHRYADEHGCGFDYKSSGRELI 221          
BLAST of CX286925 vs. ExPASy Swiss-Prot
Match: ZFAN3_RAT (AN1-type zinc finger protein 3 OS=Rattus norvegicus GN=Zfand3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.598e-12
Identity = 52/197 (26.40%), Postives = 77/197 (39.09%), Query Frame = 2
Query:  179 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQP----------------------SCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDKHNCPFDYRTAARDAII 622
            PP  P      CGF+GS  TMN+CSKC+ D   KQ       S+  S       ET+S N + SV   T+     S+  ++    P                      SC ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  ++H+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNSQSDLFSEETTSDNNNTSVTTPTLSPSQQSLPTELNVTSPSEEECGPCTDTAHVSLITPTKRSCGADSQSESEASPVKRPRLVENPERPEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of CX286925 vs. ExPASy Swiss-Prot
Match: ZFAN3_MOUSE (AN1-type zinc finger protein 3 OS=Mus musculus GN=Zfand3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 52/197 (26.40%), Postives = 77/197 (39.09%), Query Frame = 2
Query:  179 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQP----------------------SCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDKHNCPFDYRTAARDAII 622
            PP  P      CGF+GS  TMN+CSKC+ D   KQ       S+  S       ET+S N + SV   T+     S+  ++    P                      SC ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  ++H+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNSQSDLFSEETTSDNNNTSVTTPTLSPSQQSLPTELNVTSPSTEECGPCTDTAHVSLITPTKRSCGADSQSENEASPVKRPRLVENPERPEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of CX286925 vs. ExPASy Swiss-Prot
Match: ZFAN3_HUMAN (AN1-type zinc finger protein 3 OS=Homo sapiens GN=ZFAND3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 51/197 (25.89%), Postives = 77/197 (39.09%), Query Frame = 2
Query:  179 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQP----------------------SCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDKHNCPFDYRTAARDAII 622
            PP  P      CGF+GS  TMN+CSKC+ D   KQ     A S+  S       ET+S N + S+   T+      +  ++    P                      SC ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  ++H+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLFSEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGTDSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of CX286925 vs. ExPASy Swiss-Prot
Match: ZFAN3_XENLA (AN1-type zinc finger protein 3 homolog OS=Xenopus laevis GN=zfand3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.932e-12
Identity = 54/196 (27.55%), Postives = 79/196 (40.31%), Query Frame = 2
Query:  179 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVD-VQASSVEPKIIS--------------------VQPSCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDKHNCPFDYRTAARDAII 622
            PP  P      CGF+GS  TMN+CSKC+ D   KQ     A S+  S      +ET S NG+ S+   TV+  Q    E  + S                     + SC S+     +  P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  ++H+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDEDTAPSTSSSQSDLFPSETDSDNGNTSIPTPTVNPTQQLPTELNVDSPSKEDCGPCTDSAHVSLTTPSKRSCDSDSQSEDDTSPMKRPRLLDSGDRPDNSSRSKQKSRRRCFRCQIKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 204          
The following BLAST results are available for this feature:
BLAST of CX286925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SAP10_ORYSJ1.183e-1531.94Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP15_ORYSJ1.446e-1361.70Zinc finger AN1 domain-containing stress-associate... [more]
SAP14_ORYSJ2.466e-1347.62Zinc finger AN1 domain-containing stress-associate... [more]
ZFAN3_RAT1.598e-1226.40AN1-type zinc finger protein 3 OS=Rattus norvegicu... [more]
ZFAN3_MOUSE2.087e-1226.40AN1-type zinc finger protein 3 OS=Mus musculus GN=... [more]
ZFAN3_HUMAN3.560e-1225.89AN1-type zinc finger protein 3 OS=Homo sapiens GN=... [more]
ZFAN3_XENLA7.932e-1227.55AN1-type zinc finger protein 3 homolog OS=Xenopus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01002F03Rv Veg1 Citrus clementina cDNA clone C01002F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286925 ID=CX286925; Name=CX286925; organism=Citrus clementina; type=EST; length=624bp
GTCTCTAATCGGGTTTTGCCTGCTCTCTCCCCGTAGGCCGATCTGGTCCA
TTTAATTTTAGGGGCTCATTGGATGCTGGCTTGAGCTCGGGGATCGGCTT
AAGGGATTCATTGCTGTTTCTTCTGTTGCTCGCAGGGGTGGTGAAAACAT
GGACCATGATGAGACTGGATGCCAAGCTCCTCCTGAGGGCCCTATCTTGT
GCATCAACAATTGTGGTTTCTTTGGAAGTGTGGCTACTATGAATATGTGT
TCCAAATGCTACAAGGATATAATGCTGAAACAGGATCAAGCTAAGCTTGC
TGCTTCATCTATTGGAAGCATTGTGAATGAAACGTCAAGCAGCAATGGAA
GTGAATCTGTTGCTGCTGCCACTGTTGATGTGCAAGCTAGTTCAGTGGAG
CCAAAAATCATCTCTGTGCAGCCATCATGTGCTTCAGAATTGAGCGAGAG
TGTGGAGGCAAAGCCGAAGGAGGGTCCCAGCCGGTGCAGCAGTTGCAAGA
AGCGTGTTGGTTTAACAGGATTCAAATGTCGCTGTGGTAACTTATACTGT
GTGTCACATCGCTATTCGGACAAACATAACTGCCCCTTTGACTACCGCAC
TGCTGCTAGGGATGCTATAATTAA
back to top