CX286931

Overview
NameCX286931
Unique NameCX286931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286931_ssr440 microsatellite CX286931_ssr440:440..451. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2562 contig Ccv1_Contig2562:246..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV I YKIS +T+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.341e-24
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  114 ITCGQVTASLAPCIPFLRTGGRFPPP-PCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            +TCGQVT +LAPC+ +LR+    P P  CC+ VR LN AARTT D++ AC CLK+    + G+  N AAGLP++CGV I YKISP+TDC+RV
Sbjct:   28 LTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.341e-24
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 3
Query:   99 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            P   A++CGQV + LAPC+P+L+  GR P   CC GV+ L GAA++  DR+ AC CLK A   I+GI    AAGLP  CGV I YKISPSTDCS+V+
Sbjct:   20 PHAEALSCGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.341e-24
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 3
Query:   99 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            P   +++CG+VT+ LAPC+P+L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  +I+GI    AAGLP  CGV I YKISPSTDCS V+
Sbjct:   20 PHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.751e-24
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 3
Query:  108 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A G+I  +  N AA LP +C V I YKIS ST+C+ +R
Sbjct:   23 SAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.751e-24
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 3
Query:  102 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            V  AITCG V +SL+PC+ +L  GG   PPPCC+GV+ LNG A+TTPDRQ AC CL+ A    +G+ P++A+GLP +CGV I Y IS ST+C+ ++
Sbjct:   21 VDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSA---AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AI+CGQV++++A C+ + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   I G+    AA +PS+CGV + Y IS STDCSRV
Sbjct:   26 AISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.986e-24
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV I Y ISPS DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.986e-24
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV I Y ISPS DCS V
Sbjct:   26 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.986e-24
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV I Y ISPS DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
The following BLAST results are available for this feature:
BLAST of CX286931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP2_LENCU7.859e-2558.06Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP_DAUCA1.341e-2456.52Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP2_TOBAC1.341e-2455.67Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP2_SOLLC1.341e-2455.67Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP_CICAR1.751e-2458.51Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP4_ARATH1.751e-2454.17Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_SORBI2.287e-2458.70Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_ORYSI2.986e-2457.61Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2B_ORYSJ2.986e-2457.61Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ2.986e-2457.61Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionC01002F09Rv Veg1 Citrus clementina cDNA clone C01002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286931 ID=CX286931; Name=CX286931; organism=Citrus clementina; type=EST; length=610bp
GATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAGAATCCTCATGGCT
GCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCCCC
GGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGGCTCCAT
GCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCATGCTGT
AGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGCCA
AGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGCGGCATCA
AACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTTCT
TACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAGT
TTGAGCTCTGTGACTTTCCAAGTATGATTGACTGTGAAGAATAAATAAAT
AAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTATG
AGATTCACTCTCATGTCATGTGTGTATATATGCTTTTTATGTCATATTAA
ATATGTAAACGCGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAAAA
AAAAAAAAAC
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