CX286931

Overview
NameCX286931
Unique NameCX286931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.312e-23
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV + Y IS S DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.312e-23
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV + Y IS S DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.356e-23
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  108 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            +AITCGQV + L  C+ + R GG  PP  CC+GVR+LN  A+TTPDRQ ACNCLK       G+   + AG+P +CGV I Y I   TDC++VR
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.639e-22
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC CLK    +I+GI     +G+P +CGV + + IS STDC++V
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.140e-22
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  114 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            ITCG V++ LAPCI +L+ G       CC G+++LN AA TTPDR+ ACNCLK A   I+GI    AAGLP  CGV I Y ISPST+C+ V
Sbjct:   28 ITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.651e-22
Identity = 50/93 (53.76%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNC-LKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AI+CGQV++++ PC+ + R  G  P   C SGVRSLN AARTT DR+AACNC LK A   + G+    A+ +P +CGVR+ Y IS S DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.133e-22
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPN--VAAGLPSQCGVRISYKISPSTDCSRVR 389
            A++CGQV  +L PCI ++  GG   P  CC+GVRSL   A+TT DRQ+ CNCLK+A   I     N  +AAGLP +CGV I YKISPSTDC  ++
Sbjct:   30 AVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.387e-21
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 3
Query:   99 PVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            P+T+  A++CG V ++LA CI ++  GG  PP  CCSGV++LN  A+TTPDRQ ACNC++   RA G+  G+    AAG+P  CGV I YKIS ST+C  VR
Sbjct:   20 PITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS--GLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.090e-21
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 3
Query:   99 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            P+  AITCG V + LAPCI +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  +I+GI    AA LP QCGV + Y ISP+T+C+ +
Sbjct:   22 PLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.271e-21
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  114 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            ++CG V   LAPCI +LR+ G  P   CC+GV++L  +A TT DR+ AC CL  A  +I G+   +AAGLP +CGV I YKISPST+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
The following BLAST results are available for this feature:
BLAST of CX286931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP1_ORYSJ4.312e-2356.52Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI4.312e-2356.52Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
SCA_LILLO7.356e-2352.13Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP3_HORVU1.639e-2251.09Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP_SPIOL2.140e-2256.04Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_ELECO3.651e-2253.76Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP3_PRUDU8.133e-2253.68Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP1_ARATH1.387e-2151.96Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP_BETVU3.090e-2150.00Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP5_VITSX5.271e-2151.65Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]

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Properties
Property NameValue
Genbank descriptionC01002F09Rv Veg1 Citrus clementina cDNA clone C01002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286931 ID=CX286931; Name=CX286931; organism=Citrus clementina; type=EST; length=610bp
GATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAGAATCCTCATGGCT
GCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCCCC
GGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGGCTCCAT
GCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCATGCTGT
AGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGCCA
AGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGCGGCATCA
AACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTTCT
TACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAGT
TTGAGCTCTGTGACTTTCCAAGTATGATTGACTGTGAAGAATAAATAAAT
AAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTATG
AGATTCACTCTCATGTCATGTGTGTATATATGCTTTTTATGTCATATTAA
ATATGTAAACGCGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAAAA
AAAAAAAAAC
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