CX286931

Overview
NameCX286931
Unique NameCX286931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286931_ssr440 microsatellite CX286931_ssr440:440..451. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2562 contig Ccv1_Contig2562:246..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+SY +SP+ +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+SY +SP+ +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.003e-20
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   99 PVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            P+T+  A++CG V+  +APCI +L       P  CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV I YKIS +T+C+ V+
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.828e-20
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 3
Query:  114 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            ++CG V   +A CI +LR  G  P   CC+GV++L  +A TT DR+ AC CL  A  TI G+   +AAGLP++CGV I YKISPST+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.612e-20
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            AI+  QV +SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  I   VAAGLP QC V I YKISPS DC RV+
Sbjct:   27 AISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.612e-20
Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV +++ IS S DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.612e-20
Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV +++ IS S DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.941e-20
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AITCGQV+++L PC  + +  G  P   CCSGV+ L G AR+T D+QA C CLK   G     +   AAG+PS+CGV + Y IS S DCS++
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.941e-20
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   99 PVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            P+T+  A++CG V+  +APCI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV I YKIS ST+C+ VR
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.696e-19
Identity = 49/93 (52.69%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            A++CG V+ +LA CI +L   G  P   CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV I YKIS +T+C+ V+
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
The following BLAST results are available for this feature:
BLAST of CX286931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP_AMACA6.885e-2150.00Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP6.885e-2150.00Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPD_BRAOT2.003e-2050.51Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP3_VITSX5.828e-2050.55Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP6_GOSHI7.612e-2053.19Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP3_ORYSJ7.612e-2044.57Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI7.612e-2044.57Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP8_HORVU9.941e-2048.91Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP2_BRANA9.941e-2050.51Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP3_BRANA1.696e-1952.69Non-specific lipid-transfer protein 3 OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionC01002F09Rv Veg1 Citrus clementina cDNA clone C01002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286931 ID=CX286931; Name=CX286931; organism=Citrus clementina; type=EST; length=610bp
GATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAGAATCCTCATGGCT
GCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCCCC
GGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGGCTCCAT
GCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCATGCTGT
AGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGCCA
AGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGCGGCATCA
AACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTTCT
TACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAGT
TTGAGCTCTGTGACTTTCCAAGTATGATTGACTGTGAAGAATAAATAAAT
AAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTATG
AGATTCACTCTCATGTCATGTGTGTATATATGCTTTTTATGTCATATTAA
ATATGTAAACGCGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAAAA
AAAAAAAAAC
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