CX286931

Overview
NameCX286931
Unique NameCX286931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.696e-19
Identity = 41/92 (44.57%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AITC  VT +L PC+P+LR+GG+ P P CC+G + L GA RT  DR+ AC C K A   ++ ++P++A+ LP +CG+  S  I+P+ +C+ +
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19
Identity = 48/93 (51.61%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            A++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV I YKIS ST+C+ VR
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.934e-19
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 3
Query:   99 PVT--NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV----AAGLPSQCGVRISYKISPSTDCSRVR 389
            P+T   A+TCG V +++APCI ++  GG  P   CC+GV  LN  ARTTPDRQ AC CL+ A    R + PN+    AAG+P  CGV + + IS +T+C+ V+
Sbjct:   20 PITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETA---ARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.934e-19
Identity = 48/93 (51.61%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            A++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A      +    AAGLP  CGV I YKIS ST+C+ VR
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.198e-18
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AI C QV   LA C+P+L+ GG  P P CC+G+ SL  AA    DRQ ACNCLK    TI GI  + A  LP++CGV I    S + DC+ +
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.455e-18
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   99 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            P  + I CG VT++LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A   I+G+  ++ A LP+ CGV I Y IS ST+C  +
Sbjct:   21 PTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.455e-18
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            A+ CGQV + + PC+ +++ GG  P   CC+GVR L+  A+++ DRQ  CNCLK     I  +  N AA +PS+C V + Y ISP  DCSR+
Sbjct:   26 ALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  114 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            + CGQV +SLA CIPFL  G   P   CC+GV++L   A T+ DR+AAC C+K A      IK + A+ LP +CGV I+  IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.877e-17
Identity = 50/96 (52.08%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            AI+CG VT SL  C  +L  GG F P  CCSGV+ LN  ARTT DRQ AC C++   RA G+   +    AA LP  C VRISY IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS--RLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 49/100 (49.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:   99 PVT-NAI-TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR-GIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            P+T NA+ +CG V  +LA CI +L  G       CC+GV +L   A TTPDRQ AC CL+ A   +  G+    AAGLPS C V I YKIS ST+C+ VR
Sbjct:   20 PITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
The following BLAST results are available for this feature:
BLAST of CX286931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP1_HELAN1.696e-1944.57Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPB_BRAOT3.778e-1951.61Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTPA_BRAOT4.934e-1946.60Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP1_BRANA4.934e-1951.61Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTPB_ARATH3.198e-1847.83Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTPC_ARATH5.455e-1845.83Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP1_HORVU5.455e-1844.57Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTPA_RICCO1.587e-1746.15Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP5_ARATH7.877e-1752.08Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP2_ARATH5.106e-1649.00Non-specific lipid-transfer protein 2 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC01002F09Rv Veg1 Citrus clementina cDNA clone C01002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286931 ID=CX286931; Name=CX286931; organism=Citrus clementina; type=EST; length=610bp
GATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAGAATCCTCATGGCT
GCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCCCC
GGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGGCTCCAT
GCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCATGCTGT
AGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGCCA
AGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGCGGCATCA
AACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTTCT
TACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAGT
TTGAGCTCTGTGACTTTCCAAGTATGATTGACTGTGAAGAATAAATAAAT
AAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTATG
AGATTCACTCTCATGTCATGTGTGTATATATGCTTTTTATGTCATATTAA
ATATGTAAACGCGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAAAA
AAAAAAAAAC
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