CX286931

Overview
NameCX286931
Unique NameCX286931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            AI CG V + + PC+ +++ GG  P   CC GV++L+  AR+  DRQ+ACNCLK     I  +  + A  +P +CGV + Y IS + DCSRV
Sbjct:   23 AIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.486e-15
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  108 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            +AI+C  V   L PC+ +L +G   PP  CC GV+SL  A  T+ D++AAC C+K    ++  +KP +A  L S CG  +    SP+ DC+ V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.486e-15
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGG-RFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI-RGIKPNVAAGLPSQCGVRISY--KISPSTDCS 380
            A++CG+V ++L PC  +L  GG   P P CC+GVR LNG   TT DR+ AC C+K A   +  G+  + AAG+P +CG++I Y  +I  +T C+
Sbjct:   26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.940e-15
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 3
Query:   99 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVR-ISYKISPSTDCSRV 386
            PV  AI+C QV +++ PC  +L      P   CC  +R L+   + TPDRQA CNCLK       G+K   AA LP  C V  ++  ISP+ DCS+V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLK-TQAKSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR--GIKPNVAAGLPSQCGVRISYKISPSTDCSRVR 389
            AI+C  V A+L PC+ ++  GG  P   CC+G+R L+  A +  D+Q  C C+K   G +    I    AA LP +CGV++ YKI PST+C+ ++
Sbjct:   23 AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  111 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV---AAGLPSQCGVRISYKISPSTDCSRVR 389
            A++C  V A L PC+ ++  GG  P   CC+G+ +L   A+T+ DRQ  C C+K A G +  + P     A  LPS+CGV + YK SPSTDC  ++
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLT-LSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 3
Query:  114 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISPSTDCSRV 386
            + CGQV  +L+ C+PFL      P   CC+GV  L   A T  D++ AC C+K A      I+ + A+ LP +CGV I+  IS +T+C  +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 31/98 (31.63%), Postives = 53/98 (54.08%), Query Frame = 3
Query:   99 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISY-KISPSTDCSRVR 389
            P      CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+ RA   I GIK  + A +P +C ++ +   I+   DCS+++
Sbjct:   28 PAPGEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKIQ 125          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 3
Query:  117 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISP---STDC 377
            TCG V  +L PC+PF++   + P   CCSG + L+G  +T P R  AC C++ A  T   I   + + +P  CG+ +  K+ P   + DC
Sbjct:   39 TCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDC 127          
BLAST of CX286931 vs. ExPASy Swiss-Prot
Match: NLT11_PARJU (Probable non-specific lipid-transfer protein (Fragment) OS=Parietaria judaica GN=PMAI PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = 3
Query:  117 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRISYKISP---STDCSRV 386
            TCG +  +L PC+PF++   + P   CCSG + L+G  +T P R  AC C++ A  T   I   + + +P  CG+ +  K+ P   + DC  V
Sbjct:    3 TCGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDCKTV 94          
The following BLAST results are available for this feature:
BLAST of CX286931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP1_WHEAT6.668e-1643.48Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP8_ARATH1.486e-1539.78Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP7_ARATH1.486e-1543.62Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP_PINTA1.940e-1542.27Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPA_ARATH4.322e-1540.00Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP6_ARATH5.645e-1541.67Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTPB_RICCO1.816e-1338.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT21_PARJU1.700e-1131.63Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT13_PARJU3.787e-1135.56Probable non-specific lipid-transfer protein 1 OS=... [more]
NLT11_PARJU4.945e-1134.41Probable non-specific lipid-transfer protein (Frag... [more]

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Properties
Property NameValue
Genbank descriptionC01002F09Rv Veg1 Citrus clementina cDNA clone C01002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286931 ID=CX286931; Name=CX286931; organism=Citrus clementina; type=EST; length=610bp
GATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAGAATCCTCATGGCT
GCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCCCC
GGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGGCTCCAT
GCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCATGCTGT
AGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGCCA
AGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGCGGCATCA
AACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTTCT
TACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAGT
TTGAGCTCTGTGACTTTCCAAGTATGATTGACTGTGAAGAATAAATAAAT
AAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTATG
AGATTCACTCTCATGTCATGTGTGTATATATGCTTTTTATGTCATATTAA
ATATGTAAACGCGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAAAA
AAAAAAAAAC
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