CX286936

Overview
NameCX286936
Unique NameCX286936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX286936 vs. ExPASy Swiss-Prot
Match: MNL1_YEAST (ER degradation-enhancing alpha-mannosidase-like protein 1 OS=Saccharomyces cerevisiae GN=MNL1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 36/98 (36.73%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:  295 WNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLXLLFSPTTVI--SLDEWVFNTEAHPL 582
            W  LRPE  ES ++L+R T +  Y   G ++ +  ++  +   G+ G ++V TG+  + M++F L+ETLKYL LLF     +  S  + +F+TEAHP+
Sbjct:  403 WYPLRPEFFESTYFLYRATKDPFYLNIGVHLLKDLKQRFKSNCGFAGFQNVITGELQDRMETFVLSETLKYLYLLFDEENELHNSASDVIFSTEAHPM 500
[Close]
BLAST of CX286936 vs. ExPASy Swiss-Prot
Match: EDEM1_HUMAN (ER degradation-enhancing alpha-mannosidase-like 1 OS=Homo sapiens GN=EDEM1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:  304 LRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLXLLFSPTTVI--SLDEWVFNTEAHPLKI 588
            LRPE VES + L++ T N  Y   G +I Q+ EK ++++ GY  L  V     ++ M+SFFL+ET KYL LLF     +  S   ++F TE H + +
Sbjct:  490 LRPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDKSTEDRMESFFLSETCKYLYLLFDEDNPVHKSGTRYMFTTEGHIVSV 586
The following BLAST results are available for this feature:
BLAST of CX286936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MNL1_YEAST4.699e-1236.73ER degradation-enhancing alpha-mannosidase-like pr... [more]
EDEM1_HUMAN1.367e-1139.18ER degradation-enhancing alpha-mannosidase-like 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC01002G04Rv Veg1 Citrus clementina cDNA clone C01002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286936 ID=CX286936; Name=CX286936; organism=Citrus clementina; type=EST; length=624bp
CTCGTGCCGGGTCTATTAAGCTTGGTTAGGAGATCAACACCATCGTCTTT
TACATACATTTGTGAGAAGAATGGGGACTCGCTGATAGACAAGATGGATG
AATTAGCATGCTTCGCTCCTGGAATGATTGCTTTAGGATCTTCTGGTTAT
GGACCCGGTGACTCTGAGAAATTTCTCTCTCTTGCAGAAGAGCTTGCTTG
GACATGTTATAACTTCTACCAGTCAACACCGACAAAATTGGCTGGAGAGA
ATTACTTCTTTCGTGATGGGCAGGACATGTCTGTGGGCACATCATGGAAC
ATACTGAGACCTGAGACTGTTGAATCACTTTTTTACTTGTGGCGTCTAAC
TGGCAACAAGACATACAAAGAGTGGGGTTGGAACATATTTCAGGCATTCG
AAAAGAACTCCCGAATAGAATCAGGATATGTTGGACTGAAAGATGTTAAT
ACTGGCGACAAAGACAACATGATGCAAAGCTTCTTTCTTGCAGAGACACT
GAAATATCTGNATCTTCTTTTCTCTCCCACAACAGTAATCTCATTAGATG
AGTGGGTTTTCAATACAGAAGCCCACCCATTAAAAATTGTGACCCAACGT
GATGGAGAGATCTCTGGGAGATCG
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