CX286938

Overview
NameCX286938
Unique NameCX286938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:53..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: TDH_ANADE (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22
Identity = 56/158 (35.44%), Postives = 92/158 (58.23%), Query Frame = 1
Query:  103 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            +P +G +DV++R+    +CG+DVH       +   V  PMV+GHE  G +E+VG+EV+   PG+RV+ E  ++C  C  C+ GR +LC  + G+G + P  G  A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ G+GP
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVERVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNRP--GSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGAGP 175          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: TDH_VIBVY (L-threonine 3-dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=tdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 57/159 (35.85%), Postives = 89/159 (55.97%), Query Frame = 1
Query:   97 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            ++ P LG  D+L+++K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     GC +  +V PA   FK+P N+S +  ++ +P    VH     ++  E +VLI G+GP
Sbjct:   20 VDKPVLGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPANISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGP 176          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: TDH_VIBVU (L-threonine 3-dehydrogenase OS=Vibrio vulnificus GN=tdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 57/159 (35.85%), Postives = 89/159 (55.97%), Query Frame = 1
Query:   97 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            ++ P LG  D+L+++K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     GC +  +V PA   FK+P N+S +  ++ +P    VH     ++  E +VLI G+GP
Sbjct:   20 VDKPVLGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPANISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGP 176          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: TDH_AERS4 (L-threonine 3-dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=tdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 60/157 (38.22%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  106 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            P LG  D+L++++   +CG+D+H       A   +  PMV+GHE  G +  VG EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G + P  G  A  +V PA   FKLPDN+  E  A+ +P    VH     ++  E +VLI G+GP
Sbjct:   21 PELGHNDLLIKIRKTAICGTDMHIYNWDEWAQKTIPVPMVVGHEYVGEVVAVGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GSFAEYLVIPAFNAFKLPDNIPDELAAIFDPFGNAVHTALSFDLVGE-DVLITGAGP 174          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: TDH_AERHH (L-threonine 3-dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 59/157 (37.58%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  106 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            P LG  D+L++++   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G + P  G  A  +V PA   FKLPDNV  E  A+ +P    VH     ++  E +VLI G+GP
Sbjct:   21 PELGHNDLLIKIRKTAICGTDIHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GAFAEYLVIPAFNAFKLPDNVPDELAAIFDPFGNAVHTALSFDLVGE-DVLITGAGP 174          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: TDH_LEGPL (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Lens) GN=tdh PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.457e-22
Identity = 58/163 (35.58%), Postives = 89/163 (54.60%), Query Frame = 1
Query:   88 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            +Q + +P  G  DVL+++K   +CG+D+H       A   +  PM +GHE  G I +VG EV+ L  G RV+ E  I+C  C  C+ G+ +LC  + G+G + P  GC A  +  PA     LPDN++ E+ A+ +P     H     ++  E +VLI G+GP
Sbjct:   15 MQDIPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRP--GCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGE-DVLITGAGP 174          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: TDH_LEGPH (L-threonine 3-dehydrogenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tdh PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.457e-22
Identity = 58/163 (35.58%), Postives = 89/163 (54.60%), Query Frame = 1
Query:   88 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            +Q + +P  G  DVL+++K   +CG+D+H       A   +  PM +GHE  G I +VG EV+ L  G RV+ E  I+C  C  C+ G+ +LC  + G+G + P  GC A  +  PA     LPDN++ E+ A+ +P     H     ++  E +VLI G+GP
Sbjct:   15 MQDIPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRP--GCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGE-DVLITGAGP 174          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: TDH_LEGPA (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Paris) GN=tdh PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.457e-22
Identity = 58/163 (35.58%), Postives = 89/163 (54.60%), Query Frame = 1
Query:   88 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            +Q + +P  G  DVL+++K   +CG+D+H       A   +  PM +GHE  G I +VG EV+ L  G RV+ E  I+C  C  C+ G+ +LC  + G+G + P  GC A  +  PA     LPDN++ E+ A+ +P     H     ++  E +VLI G+GP
Sbjct:   15 MQDIPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRP--GCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGE-DVLITGAGP 174          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: TDH_VIBPA (L-threonine 3-dehydrogenase OS=Vibrio parahaemolyticus GN=tdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 1
Query:   97 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            ++ P +G  D+L+++K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     G  A  +V PA   FK+PD +S +  ++ +P    VH     ++  E +VLI G+GP
Sbjct:   20 VDKPEVGHNDILIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNR-EGAFAEYLVIPAFNAFKIPDEISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGP 176          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: TDH_LEGPC (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Corby) GN=tdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 58/163 (35.58%), Postives = 89/163 (54.60%), Query Frame = 1
Query:   88 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            +Q + +P  G  DVL+++K   +CG+D+H       A   +  PM +GHE  G I +VG EV+ L  G RV+ E  I+C  C  C+ G+ +LC  + G+G + P  GC A  +  PA     LPDN++ E+ A+ +P     H     ++  E +VLI G+GP
Sbjct:   15 MQDVPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRP--GCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGE-DVLITGAGP 174          
The following BLAST results are available for this feature:
BLAST of CX286938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
TDH_ANADE1.103e-2235.44L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_VIBVY1.881e-2235.85L-threonine 3-dehydrogenase OS=Vibrio vulnificus (... [more]
TDH_VIBVU1.881e-2235.85L-threonine 3-dehydrogenase OS=Vibrio vulnificus G... [more]
TDH_AERS41.881e-2238.22L-threonine 3-dehydrogenase OS=Aeromonas salmonici... [more]
TDH_AERHH1.881e-2237.58L-threonine 3-dehydrogenase OS=Aeromonas hydrophil... [more]
TDH_LEGPL2.457e-2235.58L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
TDH_LEGPH2.457e-2235.58L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
TDH_LEGPA2.457e-2235.58L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
TDH_VIBPA3.209e-2235.22L-threonine 3-dehydrogenase OS=Vibrio parahaemolyt... [more]
TDH_LEGPC3.209e-2235.58L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]

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Properties
Property NameValue
Genbank descriptionC01002G06Rv Veg1 Citrus clementina cDNA clone C01002G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286938 ID=CX286938; Name=CX286938; organism=Citrus clementina; type=EST; length=573bp
GGCAAGGGAGGGATGTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAA
CATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGG
AGCTTCCTTCTCTGGGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTT
GGTGTTTGTGGAAGTGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGA
TTTTGTAGTGAAAGAGCCTATGGTGATTGGGCATGAGTGTGCTGGGGTCA
TAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTG
GCCCTGGAACCAGGGATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGG
TCGATACAACTTGTGTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTC
ATGGTTGTCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAG
CTGCCCGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAG
TGTTGGTGTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATG
TGCTTATCATGGGATCAGGGCCC
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