CX286960

Overview
NameCX286960
Unique NameCX286960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL58_ARATH (GDSL esterase/lipase At3g50400 OS=Arabidopsis thaliana GN=At3g50400 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 42/139 (30.22%), Postives = 75/139 (53.96%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSAS-NLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            + ARKF V ++ P+GC P  + +   + + CV   N  A Q+N ++    +  L+  L     V  +++    +L+ +   +GF  A+ +CC T      +  C   S+  C + S++VFWD+ HP+EAAN +IAD+++
Sbjct:  219 MDARKFVVGNVAPIGCIPYQKSINQLNDKQCVDLANKLAIQYNARLKDLLTVELKDSLKDAHFVYANVYDLFMDLIVNFKDYGFRTASEACCETRGRLAGILPCGPTSS-LCTDRSKHVFWDAYHPTEAANLLIADKLL 356          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL91_ARATH (GDSL esterase/lipase At1g28640 OS=Arabidopsis thaliana GN=At1g28640 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 47/151 (31.13%), Postives = 71/151 (47.02%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGR-------GCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFV-EATRSCCGTGTTKRTVF--LCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMIVQG 428
            LG + F V    PLGC+PA   LF            GC+ R+N   +  N+++ +    LQ+    + I+  D +  LF L Q P K+GF      +CCG G          C  +    C N S+YV WD  H +EA ++ +A ++I+ G
Sbjct:  216 LGGKTFLVPGNFPLGCYPAYLTLFQTAAEEDHDPFTGCIPRLNEFGEYHNEQLKTELKRLQELYDHVNIIYADYYNSLFRLYQEPVKYGFKNRPLAACCGVGGQYNFTIGKECGHRGVSCCQNPSEYVNWDGYHLTEATHQKMA-QVILNG 365          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL49_ARATH (GDSL esterase/lipase At3g05180 OS=Arabidopsis thaliana GN=At3g05180 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 48/149 (32.21%), Postives = 73/149 (48.99%), Query Frame = 3
Query:    9 GARKFGVTSLPPLGCFPAARILFGNHGR-----GCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTV---FLCNQK--------SARTCPNASQYVFWDSVHPSEAANKVIA 407
            GAR + + +  PLGC      +FG         GCVS  N AA+ FN +++     L +Q P  +    DIF    +L+ + SK+GF  +   CCGTG           C +         +A+ C ++S+YV WD +H +EAAN+ +A
Sbjct:  214 GARNYWIHNTGPLGCLAQVVSIFGEDKSKLDEFGCVSDHNQAAKLFNLQLHGLFKKLPQQYPNSRFTYVDIFSIKSDLILNHSKYGFDHSIMVCCGTGGPPLNYDDQVGCGKTARSNGTIITAKPCYDSSKYVNWDGIHYTEAANRFVA 362          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL37_ARATH (GDSL esterase/lipase At2g19060 OS=Arabidopsis thaliana GN=At2g19060 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14
Identity = 49/138 (35.51%), Postives = 68/138 (49.28%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQK--QLPGLKIVIFDIFKPLFELVQSPSKF---GFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVI 404
            LGARK  V  +  LGC P      G  G+GC + +N A + FNKK+    S   +   +   K    D+F       Q+P ++   GF    +SCC   T +    LC       CPN  +YV+WD+VH +EAANKV+
Sbjct:  202 LGARKVAVFGVSKLGCTPRMIASHGG-GKGCATEVNKAVEPFNKKLKDLISEFNRISVVDHAKFTFVDLFSS-----QNPIEYFILGFTVTDKSCC---TVESGQELCAANKP-VCPNRERYVYWDNVHSTEAANKVV 329          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: LTL1_ARATH (GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 42/138 (30.43%), Postives = 71/138 (51.45%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            LGAR+  VT    +GC PA       +G  C   +  AA  FN ++    +++  ++     V  + ++   + + +P +FGFV +  +CCG G     + LC   S   CPN   Y FWD+ HP+E AN++I ++++
Sbjct:  209 LGARRVLVTGTGAMGCAPAELAQHSRNGE-CYGALQTAAALFNPQLVDLIASVNAEIGQDVFVAANAYQMNMDYLSNPEQFGFVTSKVACCGQGPYNG-IGLCTPVS-NLCPNRDLYAFWDAFHPTEKANRIIVNQIL 343          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL9_ARATH (GDSL esterase/lipase At1g28600 OS=Arabidopsis thaliana GN=At1g28600 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 45/149 (30.20%), Postives = 73/149 (48.99%), Query Frame = 3
Query:    3 GLGARKFGVTSLPPLGCFPAARILFGNHGR-------GCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEAT-RSCCGTGTTKRTVFL--CNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            G+G + F V    P+GC      L+    +       GC+  +N   +  ++K+    + L+K  P + I+  D +  L  + + P+KFGF+E    +CCG G      F   C     ++C + S+YV WD VH +EAA K IAD ++
Sbjct:  209 GMGGKTFLVPGEFPIGCSVVYLTLYKTSNKDEYDPSTGCLKWLNKFGEYHSEKLKVELNRLRKLYPHVNIIYADYYNSLLRIFKEPAKFGFMERPFPACCGIGGPYNFNFTRKCGSVGVKSCKDPSKYVGWDGVHMTEAAYKWIADGIL 357          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL31_ARATH (GDSL esterase/lipase At1g74460 OS=Arabidopsis thaliana GN=At1g74460 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILF--GNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            LGARK  V  L P+GC P  R L   GN    C ++ +  A++FNK   +   +L+ +LP       + +  + +++ +P K+GF  +   CC      R    C   S   C + S+YVFWD  HP++ AN+++A+ +I
Sbjct:  204 LGARKLMVFGLGPMGCIPLQRALSLDGN----CQNKASNLAKRFNKAATTMLLDLETKLPNASYRFGEAYDLVNDVITNPKKYGFDNSDSPCCSFYRI-RPALTCIPAST-LCKDRSKYVFWDEYHPTDKANELVANILI 337          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL36_ARATH (GDSL esterase/lipase At2g19050 OS=Arabidopsis thaliana GN=At2g19050 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13
Identity = 50/137 (36.50%), Postives = 63/137 (45.99%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKF---GFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIA 407
            LGARK  V  +  LGC P      G  G GC + +N A + FNK + +      +     K    DIF       QSP  F   GF    +SCC   T K    LC       CP   +YV+WD+VH +EAAN V+A
Sbjct:  203 LGARKVAVFGVSKLGCTPRMIASHGG-GNGCAAEVNKAVEPFNKNLKALVYEFNRDFADAKFTFVDIFSG-----QSPFAFFMLGFRVTDKSCC---TVKPGEELCATNEP-VCPVQRRYVYWDNVHSTEAANMVVA 329          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL7_ARATH (GDSL esterase/lipase At1g28580 OS=Arabidopsis thaliana GN=At1g28580 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 46/158 (29.11%), Postives = 76/158 (48.10%), Query Frame = 3
Query:    3 GLGARKFGVTSLPPLGCFPAARILFGNHGR----------GCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRS-CCGTGTTKRTVF--LCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMIVQGFAL 437
            G+G R F V    P+GC   + +   +H            GC+  +N   +   +++ +  + LQK  P + I+  D +  LF L Q P+KFGF+    S CCG G          C      +C + S+YV WD VH +EAA +++A+ ++   +A+
Sbjct:  216 GMGGRTFLVPGEFPVGC---SVLYLTSHQTSNMEEYDPLTGCLKWLNKFGENHGEQLRAELNRLQKLYPHVNIIYADYYNALFHLYQEPAKFGFMNRPLSACCGAGGPYNYTVGRKCGTDIVESCDDPSKYVAWDGVHMTEAAYRLMAEGILNGPYAI 370          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL60_ARATH (GDSL esterase/lipase At3g62280 OS=Arabidopsis thaliana GN=At3g62280 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 43/150 (28.67%), Postives = 70/150 (46.67%), Query Frame = 3
Query:    9 GARKFGVTSLPPLGCFPAARILFGNHGR-----GCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTV---FLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMIVQGFA 434
            G RKF V +  PLGC P    +  ++       GC    N  A+ FNK + S  + L+ Q     +V  DI+   ++L      +GFV+   +CCG G           C Q  +  C + ++ + WD VH +EAAN+ + D ++   ++
Sbjct:  206 GGRKFWVHNTGPLGCAPKELAIHLHNDSDLDPIGCFRVHNEVAKAFNKGLLSLCNELRSQFKDATLVYVDIYSIKYKLSADFKLYGFVDPLMACCGYGGRPNNYDRKATCGQPGSTICRDVTKAIVWDGVHYTEAANRFVVDAVLTNRYS 355          
The following BLAST results are available for this feature:
BLAST of CX286960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
GDL58_ARATH3.217e-1430.22GDSL esterase/lipase At3g50400 OS=Arabidopsis thal... [more]
GDL91_ARATH4.201e-1431.13GDSL esterase/lipase At1g28640 OS=Arabidopsis thal... [more]
GDL49_ARATH4.201e-1432.21GDSL esterase/lipase At3g05180 OS=Arabidopsis thal... [more]
GDL37_ARATH5.487e-1435.51GDSL esterase/lipase At2g19060 OS=Arabidopsis thal... [more]
LTL1_ARATH7.166e-1430.43GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana ... [more]
GDL9_ARATH7.166e-1430.20GDSL esterase/lipase At1g28600 OS=Arabidopsis thal... [more]
GDL31_ARATH7.166e-1432.14GDSL esterase/lipase At1g74460 OS=Arabidopsis thal... [more]
GDL36_ARATH1.222e-1336.50GDSL esterase/lipase At2g19050 OS=Arabidopsis thal... [more]
GDL7_ARATH4.645e-1329.11GDSL esterase/lipase At1g28580 OS=Arabidopsis thal... [more]
GDL60_ARATH4.645e-1328.67GDSL esterase/lipase At3g62280 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC01003A06SK Veg1 Citrus clementina cDNA clone C01003A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286960 ID=CX286960; Name=CX286960; organism=Citrus clementina; type=EST; length=577bp
ATGGATTGGGAGCAAGGAAATTTGGAGTCACTTCATTGCCACCGCTGGGT
TGCTTTCCCGCAGCAAGAATTTTATTCGGTAATCATGGAAGGGGCTGTGT
CTCTAGAATCAATATTGCTGCTCAACAATTTAATAAGAAGGTCAACTCTT
CAGCATCAAATCTCCAAAAGCAACTTCCTGGTCTGAAAATTGTGATTTTC
GACATTTTCAAGCCACTCTTTGAACTTGTCCAGTCCCCTTCAAAATTTGG
CTTCGTGGAAGCAACAAGAAGTTGCTGTGGAACAGGAACTACAAAGAGAA
CTGTATTTCTGTGCAATCAAAAGTCAGCTAGAACATGCCCCAATGCCTCC
CAGTATGTGTTCTGGGACAGTGTTCATCCTTCTGAGGCTGCTAATAAGGT
TATTGCCGACGAAATGATTGTTCAAGGATTTGCCCTTATCTGAAGAGGAT
ATCTAGTCCACAAATATGACCAACATTTCTGTTCAGGTTTCTTCACCCTC
TAGGTATCTGGGCCTCAGATTATCTATTTGTTCGTTTTTCATTTCAAAAA
AAAAAAAAAAAAAAGGGGGGGCCCGGT
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