CX286961

Overview
NameCX286961
Unique NameCX286961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286961 vs. ExPASy Swiss-Prot
Match: GDL37_ARATH (GDSL esterase/lipase At2g19060 OS=Arabidopsis thaliana GN=At2g19060 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 45/92 (48.91%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  167 VSAVIVFGDSIVDTGNNNNLKTPAKCNFPPYGRDFEGGAATGRFSNGKVPSDILAEELGVKELSLAYLDPTL---KPEDLLTGVNFASGGCG 433
            V    VFGDS+ D GNNN L T AK N+ PYG DF  G  TGRFSNG+   D +AE     EL ++Y  P       E   TG+N+ASGG G
Sbjct:   28 VPCYFVFGDSVFDNGNNNELDTLAKVNYSPYGIDFARG-PTGRFSNGRNIPDFIAE-----ELRISYDIPPFTRASTEQAHTGINYASGGAG 113          
BLAST of CX286961 vs. ExPASy Swiss-Prot
Match: GDL87_ARATH (GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.479e-13
Identity = 52/125 (41.60%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   80 SIFLILFSVSVLDLFCRTEAVI-KLPGNVTVSAVIVFGDSIVDTGNNNNLKTP-AKCNFPPYGRDFEGGAATGRFSNGKVPSDILAEELGV----KELSL-AYLDPTLKPEDLLTGVNFASGGCG 433
            +IFL+   +   D F   EA   KL    ++  + VFGDS+VD GNNN L    +K N+P  G DF     TGRF NGK  +D +AE+ G+      LSL   L    +    +TGVNFASGG G
Sbjct:   10 TIFLLFLGLLRFDSFPGLEAATGKL---ASIPGLYVFGDSLVDAGNNNYLPISISKANYPHNGVDFPNKKPTGRFCNGKNAADAIAEKFGLPLPPPYLSLRGLLKREKRKSAAVTGVNFASGGAG 131          

HSP 2 Score: 22.3274 bits (46), Expect = 1.479e-13
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  553 NL*KKFFLVVVGSNDI 600
            +L K  F VV+GSND+
Sbjct:  171 HLSKSLFTVVIGSNDL 186          
BLAST of CX286961 vs. ExPASy Swiss-Prot
Match: GDL28_ARATH (GDSL esterase/lipase At1g71250 OS=Arabidopsis thaliana GN=At1g71250 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 2
Query:   86 FLILFSVSVLDLFCRTEAVIKLPGNVTVSAVIVFGDSIVDTGNNNNLKTPAKCNFPPYGRDFEGGAATGRFSNGKVPSDILAEELGVKELSLAYLDPTLKPEDLLTGVNFASGGCG 433
            ++++ +++V  +  + E V    G   V A+ V GDS+VD GNNN L+T A+ NF PYG D      TGRFSNG    D+LA  L +      + DPT     +L GVN+AS   G
Sbjct:   15 YVLILALTVSVILQQPELVT---GQARVPAMFVLGDSLVDAGNNNFLQTVARANFLPYGIDM-NYQPTGRFSNGLTFIDLLARLLEIPS-PPPFADPTTSGNRILQGVNYASAAAG 125          
BLAST of CX286961 vs. ExPASy Swiss-Prot
Match: GLIP7_ARATH (GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=GLIP7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 47/114 (41.23%), Postives = 60/114 (52.63%), Query Frame = 2
Query:  173 AVIVFGDSIVDTGNNNNLKTPAKCNFPPYGRDFEGGAATGRFSNGKVPSDILAEELGVKELSLAYLDPTLKPEDLLTGVNFASGGCGYDPLTTRXXXXXXXXXDQLQLFKEYID 514
            A  VFGDS+VD+GNNN + T A+ N+ PYG DF  G  TGRF NG+   D  A  LG+  L   YL P    ++ L GVN+AS   G    T R          Q+  F+  I+
Sbjct:   30 AFFVFGDSLVDSGNNNYIPTLARANYFPYGIDF--GFPTGRFCNGRTVVDYGATYLGL-PLVPPYLSPLSIGQNALRGVNYASAAAGILDETGRHYGARTTFNGQISQFEITIE 140          
BLAST of CX286961 vs. ExPASy Swiss-Prot
Match: GLIP6_ARATH (GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=GLIP6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 2
Query:  140 VIKLPGNVTVSAVIVFGDSIVDTGNNN-NLKTPAKCNFPPYGRDFEGGAATGRFSNGKVPSDILAEELGVK------ELSLAYLDPTLKPEDLLTGVNFASGGCGYDPLTTRXXXXXXXXXDQLQLFKEYIDK 517
            V+    + TV A+  FGDSI D GNN+ N    A+ +FPPYG  F     TGRF+NG+  +D ++E +G+       EL +  L+ T    +   G+NFAS G G   L T           QLQ F+  +++
Sbjct:   20 VVLAKSSSTVPAIFTFGDSIFDAGNNHYNKNCTAQADFPPYGSSF-FHRPTGRFTNGRTVADFISEFVGLPLQKPFLELQIQILNGT---SNFSNGINFASAGSGL-LLDTNKFMGVTPIQTQLQQFQTLVEQ 147          
The following BLAST results are available for this feature:
BLAST of CX286961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GDL37_ARATH1.390e-1348.91GDSL esterase/lipase At2g19060 OS=Arabidopsis thal... [more]
GDL87_ARATH1.479e-1341.60GDSL esterase/lipase At5g55050 OS=Arabidopsis thal... [more]
GDL28_ARATH6.901e-1339.66GDSL esterase/lipase At1g71250 OS=Arabidopsis thal... [more]
GLIP7_ARATH2.008e-1241.23GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=... [more]
GLIP6_ARATH2.899e-1135.34GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01003A07SK Veg1 Citrus clementina cDNA clone C01003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286961 ID=CX286961; Name=CX286961; organism=Citrus clementina; type=EST; length=608bp
TAAGGACATATTTCTGAACTCTTCATATATTTTCCATGCGATGCAGTTTC
TGCCAATGAAGCTGTCTTTTTCTGATGCCTCCATTTTTTTAATTTTGTTT
TCTGTTTCTGTTTTGGATCTTTTTTGCAGAACAGAAGCAGTTATTAAGCT
ACCGGGCAATGTTACTGTTTCAGCAGTTATTGTATTTGGAGATTCAATCG
TTGATACAGGCAATAACAATAATCTGAAAACGCCGGCTAAATGTAATTTT
CCTCCTTATGGGAGAGATTTCGAGGGAGGAGCGGCAACTGGCAGATTTTC
TAATGGAAAGGTCCCCTCAGACATTTTAGCGGAAGAATTGGGCGTAAAAG
AGCTTTCGCTAGCATATCTGGATCCAACTCTGAAACCTGAAGATCTTCTC
ACAGGTGTAAACTTTGCTTCCGGTGGCTGTGGATACGATCCTTTGACCAC
AAGACTTTCGGCAGCAGCTTTATCATTATCTGATCAGCTCCAACTGTTCA
AGGAATATATAGACAAGCTGAGAGCGATTGTTGGAGAAGAAGGCAAAAAC
AGAATCTTTGAAAGAAGTTTTTTTTGGTGGTAGTAGGAAGCAATGACATA
AACAACAA
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