CX286963
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_MOUSE (DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 4.519e-17 Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 3 Query: 96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDF 344 KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR+NF+ DWRK + + + I NL CDF Sbjct: 218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDF 304
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1M_HUMAN (DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.708e-17 Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIY 356 KW L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K FR+NF+NDWRK + + VI++L+ CDF I+ Sbjct: 52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIH 142
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1M_PANTR (DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16 Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 3 Query: 96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIY 356 KW L H G F PPY LP GV+ Y+GK V L+ EEVAT + ML +Y K FR+NF+NDWRK + + VI++L+ CDF I+ Sbjct: 52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGKPVRLSVAAEEVATFYGRMLGHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIH 142
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_XENLA (DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16 Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 3 Query: 96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDF 344 KW L H G +F PPY +P VK Y G V L+P+ EEVAT FA MLD +Y K FR+NF+ DW+K + + ++I NL CDF Sbjct: 272 KWKFLEHKGPVFAPPYEPVPDNVKFYYDGNLVKLSPKAEEVATFFAKMLDHEYTTKDIFRKNFFKDWKKEMTTDERNLITNLSKCDF 358
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_USTMA (DNA topoisomerase 1 OS=Ustilago maydis GN=TOP1 PE=3 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 1.042e-13 Identity = 43/121 (35.54%), Postives = 70/121 (57.85%), Query Frame = 3 Query: 24 KKVIKNSQYS-KSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDW 362 K + K+S+ + K K + +G G+KKW L+H G FP PY LP VK+ Y G+ V+L + EE+A +AV L+T + Q F NF++D++ L K I++ + DF+ +Y++ Sbjct: 137 KPLSKSSKSNRKPPKTMSITGSGEKKWDVLIHKGPRFPDPYQPLPKDVKLKYDGRPVDLPWQTEEIAMFYAVKLETQHAQNAIFNRNFFDDFKTDLKKYPPRDGTQIKSFDKLDFRDMYNY 257
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_CAEEL (DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.031e-13 Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 3 Query: 96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPI 353 KW +L H G +F PPY LP V Y G+++ LT E EE+A +A +LD +Y K F +NF DWRK++ + I +L+ CDF+ I Sbjct: 258 KWNSLQHCGPLFAPPYIPLPSHVHFKYGGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFNKNFMKDWRKVMTVEERERIHDLKKCDFRAI 347
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_DROME (DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.170e-13 Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 3 Query: 96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDW 362 KW+TL H G +F P Y +P V+ Y GK + L+ E EE AT +A ML+ DY K F NF+ D+RK + + +I++ C+F+ ++++ Sbjct: 439 KWSTLEHKGPVFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQEMFNY 531
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1M_RAT (DNA topoisomerase I, mitochondrial OS=Rattus norvegicus GN=Top1mt PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.753e-13 Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 3 Query: 3 IRHRKKTKKVIKNSQYSKSTKMLPGSGDGQK---KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPIY 356 + R +++V + S+ S++ G G+ K KW L H G F P Y LP GV+ Y GK V L+ EEVAT + ML + K FR NF++DW+K + + +I +L+ CDF I+ Sbjct: 16 VPRRVPSRQVSRGSKASRA-----GWGETSKSSVKWKQLEHKGPCFAPAYEPLPDGVRFFYDGKPVRLSLAAEEVATFYGKMLHLECTTKEVFRRNFFSDWQKEMTAEERKLITHLDKCDFSEIH 135
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1M_MOUSE (DNA topoisomerase I, mitochondrial OS=Mus musculus GN=Top1mt PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.152e-12 Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 3 Query: 96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPIY 356 KW L H G F P Y LP GV LY GK + L+ EEVAT + ML + K FR NF++DWRK + + +I +L+ CDF I+ Sbjct: 45 KWRQLEHKGPYFTPAYEPLPDGVHFLYDGKPLKLSLAAEEVATFYGKMLHLECTSKEVFRRNFFSDWRKEMTPEERRLITHLDKCDFTEIH 135 The following BLAST results are available for this feature:
BLAST of CX286963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CX286963 ID=CX286963; Name=CX286963; organism=Citrus clementina; type=EST; length=436bpback to top |