CX286963

Overview
NameCX286963
Unique NameCX286963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length436
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_MOUSE (DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.519e-17
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 3
Query:   96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDF 344
            KW  L H G +F PPY  LP  VK  Y GK + L+P+ EEVAT FA MLD +Y  K  FR+NF+ DWRK +   + + I NL  CDF
Sbjct:  218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDF 304          
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1M_HUMAN (DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.708e-17
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 3
Query:   96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIY 356
            KW  L H G  F PPY  LP GV+  Y+G+ V L+   EEVAT +  MLD +Y  K  FR+NF+NDWRK +   +  VI++L+ CDF  I+
Sbjct:   52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIH 142          
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1M_PANTR (DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 3
Query:   96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIY 356
            KW  L H G  F PPY  LP GV+  Y+GK V L+   EEVAT +  ML  +Y  K  FR+NF+NDWRK +   +  VI++L+ CDF  I+
Sbjct:   52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGKPVRLSVAAEEVATFYGRMLGHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIH 142          
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_XENLA (DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 3
Query:   96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDF 344
            KW  L H G +F PPY  +P  VK  Y G  V L+P+ EEVAT FA MLD +Y  K  FR+NF+ DW+K +   + ++I NL  CDF
Sbjct:  272 KWKFLEHKGPVFAPPYEPVPDNVKFYYDGNLVKLSPKAEEVATFFAKMLDHEYTTKDIFRKNFFKDWKKEMTTDERNLITNLSKCDF 358          
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_USTMA (DNA topoisomerase 1 OS=Ustilago maydis GN=TOP1 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.042e-13
Identity = 43/121 (35.54%), Postives = 70/121 (57.85%), Query Frame = 3
Query:   24 KKVIKNSQYS-KSTKMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDW 362
            K + K+S+ + K  K +  +G G+KKW  L+H G  FP PY  LP  VK+ Y G+ V+L  + EE+A  +AV L+T + Q   F  NF++D++  L K        I++ +  DF+ +Y++
Sbjct:  137 KPLSKSSKSNRKPPKTMSITGSGEKKWDVLIHKGPRFPDPYQPLPKDVKLKYDGRPVDLPWQTEEIAMFYAVKLETQHAQNAIFNRNFFDDFKTDLKKYPPRDGTQIKSFDKLDFRDMYNY 257          
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_CAEEL (DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.031e-13
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 3
Query:   96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPI 353
            KW +L H G +F PPY  LP  V   Y G+++ LT E EE+A  +A +LD +Y  K  F +NF  DWRK++   +   I +L+ CDF+ I
Sbjct:  258 KWNSLQHCGPLFAPPYIPLPSHVHFKYGGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFNKNFMKDWRKVMTVEERERIHDLKKCDFRAI 347          
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_DROME (DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.170e-13
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 3
Query:   96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDW 362
            KW+TL H G +F P Y  +P  V+  Y GK + L+ E EE AT +A ML+ DY  K  F  NF+ D+RK +   +  +I++   C+F+ ++++
Sbjct:  439 KWSTLEHKGPVFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQEMFNY 531          
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1M_RAT (DNA topoisomerase I, mitochondrial OS=Rattus norvegicus GN=Top1mt PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.753e-13
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 3
Query:    3 IRHRKKTKKVIKNSQYSKSTKMLPGSGDGQK---KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPIY 356
            +  R  +++V + S+ S++     G G+  K   KW  L H G  F P Y  LP GV+  Y GK V L+   EEVAT +  ML  +   K  FR NF++DW+K +   +  +I +L+ CDF  I+
Sbjct:   16 VPRRVPSRQVSRGSKASRA-----GWGETSKSSVKWKQLEHKGPCFAPAYEPLPDGVRFFYDGKPVRLSLAAEEVATFYGKMLHLECTTKEVFRRNFFSDWQKEMTAEERKLITHLDKCDFSEIH 135          
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1M_MOUSE (DNA topoisomerase I, mitochondrial OS=Mus musculus GN=Top1mt PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.152e-12
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 3
Query:   96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPIY 356
            KW  L H G  F P Y  LP GV  LY GK + L+   EEVAT +  ML  +   K  FR NF++DWRK +   +  +I +L+ CDF  I+
Sbjct:   45 KWRQLEHKGPYFTPAYEPLPDGVHFLYDGKPLKLSLAAEEVATFYGKMLHLECTSKEVFRRNFFSDWRKEMTPEERRLITHLDKCDFTEIH 135          
The following BLAST results are available for this feature:
BLAST of CX286963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TOP1_MOUSE4.519e-1750.57DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 S... [more]
TOP1M_HUMAN7.708e-1747.25DNA topoisomerase I, mitochondrial OS=Homo sapiens... [more]
TOP1M_PANTR2.243e-1647.25DNA topoisomerase I, mitochondrial OS=Pan troglody... [more]
TOP1_XENLA4.996e-1648.28DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2... [more]
TOP1_USTMA1.042e-1335.54DNA topoisomerase 1 OS=Ustilago maydis GN=TOP1 PE=... [more]
TOP1_CAEEL3.031e-1342.22DNA topoisomerase 1 OS=Caenorhabditis elegans GN=t... [more]
TOP1_DROME5.170e-1337.63DNA topoisomerase 1 OS=Drosophila melanogaster GN=... [more]
TOP1M_RAT6.753e-1336.00DNA topoisomerase I, mitochondrial OS=Rattus norve... [more]
TOP1M_MOUSE1.152e-1242.86DNA topoisomerase I, mitochondrial OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC01003A09SK Veg1 Citrus clementina cDNA clone C01003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286963 ID=CX286963; Name=CX286963; organism=Citrus clementina; type=EST; length=436bp
GAATTCGGCACAGGAAGAAAACCAAGAAAGTAATAAAAAATTCACAGTAT
TCAAAGTCAACAAAAATGTTACCTGGTTCAGGTGATGGTCAGAAAAAATG
GACTACCTTGGTTCACAACGGTGTTATTTTCCCACCTCCATACTTGCCTC
ATGGGGTTAAGATGCTCTACAAGGGGAAAGAAGTTAATTTGACTCCTGAA
CAAGAGGAGGTTGCAACAATGTTTGCAGTGATGCTAGATACGGATTACAT
GCAGAAACCTAAATTCAGAGAAAACTTTTGGAATGATTGGCGCAAATTGC
TGGGCAAGAACCATGTAATTCAGAATCTGGAGGGTTGTGACTTTAAGCCA
ATCTATGATTGGCATCAAGAGCAGAAAGAGAAAAAGAAACAGATGAGTTC
AGAAGAGAAGAAGGCCTTGAAAAAAAAAAAAAAAAA
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