CX286967

Overview
NameCX286967
Unique NameCX286967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_RHOP5 (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 57/121 (47.11%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            + TG+RK A+ARV ++ G GK I+N R+ + Y    P+    I+ PLV       YDV     GGGLSGQA A+  G+++AL     + R  LKK G LTRDSRVVERKK G  KAR++ Q
Sbjct:   35 YATGKRKDAVARVWIKPGAGKVIVNTREVEVYF-ARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTYFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQ 154          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_PHOLL (30S ribosomal protein S9 OS=Photorhabdus luminescens subsp. laumondii GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = 2
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            A    +GTGRRK + ARV ++ G+G  +IN R  + Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL+   +  RS L+K G +TRD+R VERKK GL KAR+ PQ
Sbjct:    2 AENQYYGTGRRKSSSARVFIKPGSGNIVINKRSLEVYF-GRETARMVVRQPLELVDMLGKLDLYITVKGGGISGQAGAIRHGITRALMAYDETLRSDLRKAGFVTRDAREVERKKVGLRKARRRPQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_COXBU (30S ribosomal protein S9 OS=Coxiella burnetii GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 58/126 (46.03%), Postives = 76/126 (60.32%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH------RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK + ARV L+ GTG+ IIN     EY  G       ++ PLV L  ++ +DV+    GGG SGQA AI  G+ RAL++  ++       RS L+K G +TRD R+VERKK GLH AR+  Q
Sbjct:   11 GTGRRKTSSARVFLRSGTGQIIINGLPLDEYF-GRETARMVVRQPLVKLDVQSRFDVYATVQGGGDSGQAGAIRHGITRALIQYDEEGGEGGTWRSTLRKAGFVTRDPRMVERKKVGLHGARRGTQ 135          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_COXBR (30S ribosomal protein S9 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 58/126 (46.03%), Postives = 76/126 (60.32%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH------RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK + ARV L+ GTG+ IIN     EY  G       ++ PLV L  ++ +DV+    GGG SGQA AI  G+ RAL++  ++       RS L+K G +TRD R+VERKK GLH AR+  Q
Sbjct:   11 GTGRRKTSSARVFLRSGTGQIIINGLPLDEYF-GRETARMVVRQPLVKLDVQSRFDVYATVQGGGDSGQAGAIRHGITRALIQYDEEGGEGGTWRSTLRKAGFVTRDPRMVERKKVGLHGARRGTQ 135          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_COXBN (30S ribosomal protein S9 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 58/126 (46.03%), Postives = 76/126 (60.32%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH------RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK + ARV L+ GTG+ IIN     EY  G       ++ PLV L  ++ +DV+    GGG SGQA AI  G+ RAL++  ++       RS L+K G +TRD R+VERKK GLH AR+  Q
Sbjct:   11 GTGRRKTSSARVFLRSGTGQIIINGLPLDEYF-GRETARMVVRQPLVKLDVQSRFDVYATVQGGGDSGQAGAIRHGITRALIQYDEEGGEGGTWRSTLRKAGFVTRDPRMVERKKVGLHGARRGTQ 135          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_COXB2 (30S ribosomal protein S9 OS=Coxiella burnetii (strain CbuG_Q212) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 58/126 (46.03%), Postives = 76/126 (60.32%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH------RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK + ARV L+ GTG+ IIN     EY  G       ++ PLV L  ++ +DV+    GGG SGQA AI  G+ RAL++  ++       RS L+K G +TRD R+VERKK GLH AR+  Q
Sbjct:   11 GTGRRKTSSARVFLRSGTGQIIINGLPLDEYF-GRETARMVVRQPLVKLDVQSRFDVYATVQGGGDSGQAGAIRHGITRALIQYDEEGGEGGTWRSTLRKAGFVTRDPRMVERKKVGLHGARRGTQ 135          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_BRASB (30S ribosomal protein S9 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 57/121 (47.11%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            + TG+RK A+ARV ++ G+GK  +N RD + Y    P+    I+ PLV       YDV     GGGLSGQA A+  G+++AL     + R  LKK G LTRDSRVVERKK G  KAR++ Q
Sbjct:   37 YATGKRKDAVARVWIKPGSGKVTVNTRDIEVYF-ARPVLRMMIQQPLVAAARNGQYDVICTVAGGGLSGQAGAVRHGLSKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQ 156          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_BORDL (30S ribosomal protein S9 OS=Borrelia duttonii (strain Ly) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 55/120 (45.83%), Postives = 76/120 (63.33%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK ++ARV ++EG G   IN+++   Y+Q   L    +  PL        YD+++  +GGG+SGQA AI  G+ARAL  + ++++  LK  G LTRDSR VERKK G  KARK+ Q
Sbjct:   14 GTGRRKSSVARVYIREGKGDIKINHKNFDVYMQLEKLKTIALS-PLALTHTLGKYDIYINVYGGGISGQAGAIRHGIARALFDLDEEYKMVLKSNGFLTRDSRKVERKKFGKKKARKSFQ 132          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_BART1 (30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            + TG+RK A+ARV ++ G+GK IIN ++  +Y    P+    ++ P+V    +T +D+     GGGLSGQA AI  G+++AL     + R  LKK G LTRDSRVVERKK G  KAR++ Q
Sbjct:   38 YATGKRKDAVARVWIKPGSGKIIINNKEFDKYF-ARPVLRMILRQPIVATNRDTQFDIVATVAGGGLSGQAGAIRHGISKALTYYEPELRPILKKGGFLTRDSRVVERKKYGKAKARRSFQ 157          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_TOLAT (30S ribosomal protein S9 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.157e-21
Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK A ARV  + G+G  +IN R  ++Y    P     +   L  +      D+++   GGG++GQA AI  G+ RAL++  +  R  L+K G +TRD+R VERKK GLHKARK PQ
Sbjct:    7 YGTGRRKSATARVFAKVGSGDIVINKRSLQDYFS-RPTARMVVMQALELVDMTGKLDLYITVAGGGITGQAGAIRHGITRALMQYDESLRPTLRKAGFVTRDARRVERKKVGLHKARKRPQ 126          
The following BLAST results are available for this feature:
BLAST of CX286967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_RHOP55.480e-2147.1130S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_PHOLL5.480e-2142.8630S ribosomal protein S9 OS=Photorhabdus luminesce... [more]
RS9_COXBU5.480e-2146.0330S ribosomal protein S9 OS=Coxiella burnetii GN=r... [more]
RS9_COXBR5.480e-2146.0330S ribosomal protein S9 OS=Coxiella burnetii (str... [more]
RS9_COXBN5.480e-2146.0330S ribosomal protein S9 OS=Coxiella burnetii (str... [more]
RS9_COXB25.480e-2146.0330S ribosomal protein S9 OS=Coxiella burnetii (str... [more]
RS9_BRASB5.480e-2147.1130S ribosomal protein S9 OS=Bradyrhizobium sp. (st... [more]
RS9_BORDL5.480e-2145.8330S ribosomal protein S9 OS=Borrelia duttonii (str... [more]
RS9_BART15.480e-2145.4530S ribosomal protein S9 OS=Bartonella tribocorum ... [more]
RS9_TOLAT7.157e-2143.8030S ribosomal protein S9 OS=Tolumonas auensis (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01003B02SK Veg1 Citrus clementina cDNA clone C01003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286967 ID=CX286967; Name=CX286967; organism=Citrus clementina; type=EST; length=623bp
AATGGCAATGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTCCC
TTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCTCA
TTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACCCC
AAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAA
CTGACCTCAAGAAATACGTCAAATCGAGGCTTCCCGGTGGCTTTGCGGCT
CAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGT
CCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGG
AATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTG
GTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGG
TGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTG
CATTGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGC
CTTCTGACCAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCA
TAAAGCCCGGAAAGCCCCACAAT
back to top