CX286967

Overview
NameCX286967
Unique NameCX286967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SHESR (30S ribosomal protein S9 OS=Shewanella sp. (strain MR-7) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQ 126
[Close]
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SHESM (30S ribosomal protein S9 OS=Shewanella sp. (strain MR-4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQ 126
[Close]
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SHESA (30S ribosomal protein S9 OS=Shewanella sp. (strain ANA-3) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQ 126
[Close]
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SHEPC (30S ribosomal protein S9 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQ 126
[Close]
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SHEON (30S ribosomal protein S9 OS=Shewanella oneidensis GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQ 126
[Close]
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SHEB9 (30S ribosomal protein S9 OS=Shewanella baltica (strain OS195) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQ 126
[Close]
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SHEB8 (30S ribosomal protein S9 OS=Shewanella baltica (strain OS185) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQ 126
[Close]
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SHEB5 (30S ribosomal protein S9 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQ 126
[Close]
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SHEB2 (30S ribosomal protein S9 OS=Shewanella baltica (strain OS223) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            AA   +GTGRRK + ARV  + G+G  ++N R   +Y  G       ++ PL  +      D++V   GGG++GQA AI  G+ RAL+++ +  R  L+  G +TRD+R VERKK GL KAR+ PQ
Sbjct:    2 AATQYYGTGRRKTSTARVFAKAGSGNIVVNQRPLDQYF-GRETARMVVRQPLELVEMTDKLDIYVTVKGGGITGQAGAIRHGITRALMQLDEALRPSLRSAGFVTRDARKVERKKVGLRKARRKPQ 126
[Close]
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SALAI (30S ribosomal protein S9 OS=Salinispora arenicola (strain CNS-205) GN=rpsI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 58/118 (49.15%), Postives = 71/118 (60.17%), Query Frame = 2 
Query:  269 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GRRK AI RV +  G+G+   N R+ + Y     +  Q IK PLVT     ++DV     GGG +GQA A+ L +ARAL+    D R  LKK G LTRD+RV E KK GL KARKAPQ
Sbjct:   34 GRRKEAIVRVRIVPGSGRITCNGRELEAYFPSK-VHQQLIKDPLVTTEKAETFDVIANLRGGGTTGQAGALRLAIARALIASEPDDRPALKKAGFLTRDARVKESKKYGLKKARKAPQ 150
The following BLAST results are available for this feature:
BLAST of CX286967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_SHESR9.348e-2141.2730S ribosomal protein S9 OS=Shewanella sp. (strain... [more]
RS9_SHESM9.348e-2141.2730S ribosomal protein S9 OS=Shewanella sp. (strain... [more]
RS9_SHESA9.348e-2141.2730S ribosomal protein S9 OS=Shewanella sp. (strain... [more]
RS9_SHEPC9.348e-2141.2730S ribosomal protein S9 OS=Shewanella putrefacien... [more]
RS9_SHEON9.348e-2141.2730S ribosomal protein S9 OS=Shewanella oneidensis ... [more]
RS9_SHEB99.348e-2141.2730S ribosomal protein S9 OS=Shewanella baltica (st... [more]
RS9_SHEB89.348e-2141.2730S ribosomal protein S9 OS=Shewanella baltica (st... [more]
RS9_SHEB59.348e-2141.2730S ribosomal protein S9 OS=Shewanella baltica (st... [more]
RS9_SHEB29.348e-2141.2730S ribosomal protein S9 OS=Shewanella baltica (st... [more]
RS9_SALAI9.348e-2149.1530S ribosomal protein S9 OS=Salinispora arenicola ... [more]

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Properties
Property NameValue
Genbank descriptionC01003B02SK Veg1 Citrus clementina cDNA clone C01003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286967 ID=CX286967; Name=CX286967; organism=Citrus clementina; type=EST; length=623bp
AATGGCAATGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTCCC
TTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCTCA
TTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACCCC
AAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAA
CTGACCTCAAGAAATACGTCAAATCGAGGCTTCCCGGTGGCTTTGCGGCT
CAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGT
CCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGG
AATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTG
GTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGG
TGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTG
CATTGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGC
CTTCTGACCAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCA
TAAAGCCCGGAAAGCCCCACAAT
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