CX286967

Overview
NameCX286967
Unique NameCX286967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_BORPD (30S ribosomal protein S9 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rpsI PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.595e-20
Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV +++G+GK I+N +   E+          ++ PL   G+  S+D+ V  HGGG +GQA A+  G+ RAL+    D +  L + G +TRD+R VERKK G  KAR+  Q
Sbjct:    7 YGTGRRKTSVARVFIKKGSGKIIVNGKPVDEFF-ARETGRMIVRQPLELTGHLESFDIKVNVHGGGETGQAGAVRHGITRALIDYDADLKPALSQAGFVTRDAREVERKKVGFRKARRRKQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_THIDA (30S ribosomal protein S9 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsI PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV ++ G+GK ++N +   EY          ++ PLV       +D+ V   GGG SGQA A+  G+ RAL+ +    +  LK  GL+TRD+R VERKK G HKAR+  Q
Sbjct:    7 YGTGRRKSSVARVFIKAGSGKIVVNDKPVDEYFS-RETGRMIVRQPLVLTDNLNRFDIMVNVAGGGESGQAGAVRHGITRALIDLDAGMKPTLKAAGLVTRDAREVERKKVGFHKARRRKQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_RALME (30S ribosomal protein S9 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rpsI PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK A+ARV ++ G G  I+N +  KEY       L  ++ PL    +  ++D+ V   GGG +GQA A+  G+ RAL+      +  L K G +TRD+R VERKK GLHKAR+  Q
Sbjct:    7 YGTGRRKSAVARVFIKSGKGDIIVNGKPIKEYF-ARETSLMIVRQPLELTAHAETFDIKVNVTGGGETGQAGAVRHGITRALIDYDATLKPTLSKAGYVTRDAREVERKKVGLHKARRRKQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_NITWN (30S ribosomal protein S9 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsI PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 56/121 (46.28%), Postives = 73/121 (60.33%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            + TG+RK A+ARV ++ G GK ++N R+   Y    P+    I+ PLV       YDV     GGGLSGQA A+  G+++AL     + R  LKK G LTRDSRVVERKK G  KAR++ Q
Sbjct:   35 YATGKRKDAVARVWIKPGAGKILVNAREVDVYF-ARPVLRMMIQQPLVAAARAGQYDVVCTVAGGGLSGQAGAVRHGLSKALTHFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQ 154          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_HALHL (30S ribosomal protein S9 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            A Q  +GTGRRK + ARV +  G G   +N R   EY  G       ++  L  +     +D+     GGG SGQA A+  G+ARAL     + ++PL++ G +TRD+R+VERKK GLHKAR+A Q
Sbjct:    2 ANQQYYGTGRRKTSAARVFMTPGNGNITVNGRPLDEYF-GRETGRMIVRQALEQVDAGDKFDIKATVSGGGSSGQAGAVRHGIARALANYDAELKAPLRRAGFITRDARMVERKKIGLHKARRATQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_FLAPJ (30S ribosomal protein S9 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rpsI PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  269 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARK 613
            GRRKCA+ARV + EGTG   +N +    Y     L  + ++ P+      T+YDV V  +GGG +GQA+A+ + +AR + +V + +R+ LK EGLLTRD R+VERKK G  KARK
Sbjct:    8 GRRKCAVARVYVSEGTGVITVNKKAFATYFPTATLQYKVLQ-PMSMTENVTNYDVKVNVYGGGSTGQAEAVRMALARVMCEVGEGNRAILKPEGLLTRDPRMVERKKFGQKKARK 121          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_CUPTR (30S ribosomal protein S9 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsI PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK A+ARV ++ G G  ++N +  KEY       L  ++ PL    +  ++D+ V   GGG +GQA A+  G+ RAL+      +S L K G +TRD+R VERKK G HKAR+  Q
Sbjct:    7 YGTGRRKSAVARVFIKSGKGDIVVNGKPIKEYF-ARETSLMIVRQPLELTAHAETFDIKVNVTGGGETGQAGAVRHGITRALIDYDATLKSALSKAGYVTRDAREVERKKVGFHKARRRKQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_ALKOO (30S ribosomal protein S9 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rpsI PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 55/121 (45.45%), Postives = 76/121 (62.81%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK +IARV L  G G   IN RD +EY +   L  + +++PL      + +DV     GGG +GQA A+  G++RAL K  ++ R  LK+ G LTRD+R+ ERKK GL  AR++PQ
Sbjct:    7 YGTGRRKQSIARVRLVPGEGNIKINNRDIEEYFKYETL-KRDVRMPLTITDTLSRFDVIATVAGGGYTGQAGALRHGISRALTKSDEELRGTLKRAGFLTRDARMKERKKYGLKAARRSPQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_ACTPJ (30S ribosomal protein S9 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsI PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            AA   +GTGRRK + ARV ++ G G   IN R    Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQ
Sbjct:    3 AANQNYGTGRRKSSSARVFIKPGNGNITINQRSLDVYF-GRETSRMVVRQPLELVELLDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQ 127          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_ACTP7 (30S ribosomal protein S9 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsI PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  245 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            AA   +GTGRRK + ARV ++ G G   IN R    Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQ
Sbjct:    3 AANQNYGTGRRKSSSARVFIKPGNGNITINQRSLDVYF-GRETSRMVVRQPLELVELLDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAAGFVTRDARRVERKKVGLHKARRRPQ 127          
The following BLAST results are available for this feature:
BLAST of CX286967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_BORPD1.595e-2041.3230S ribosomal protein S9 OS=Bordetella petrii (str... [more]
RS9_THIDA2.082e-2042.1530S ribosomal protein S9 OS=Thiobacillus denitrifi... [more]
RS9_RALME2.082e-2042.9830S ribosomal protein S9 OS=Ralstonia metalliduran... [more]
RS9_NITWN2.082e-2046.2830S ribosomal protein S9 OS=Nitrobacter winogradsk... [more]
RS9_HALHL2.082e-2042.0630S ribosomal protein S9 OS=Halorhodospira halophi... [more]
RS9_FLAPJ2.082e-2046.0930S ribosomal protein S9 OS=Flavobacterium psychro... [more]
RS9_CUPTR2.082e-2042.1530S ribosomal protein S9 OS=Cupriavidus taiwanensi... [more]
RS9_ALKOO2.082e-2045.4530S ribosomal protein S9 OS=Alkaliphilus oremlandi... [more]
RS9_ACTPJ2.082e-2042.8630S ribosomal protein S9 OS=Actinobacillus pleurop... [more]
RS9_ACTP72.082e-2042.8630S ribosomal protein S9 OS=Actinobacillus pleurop... [more]

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Properties
Property NameValue
Genbank descriptionC01003B02SK Veg1 Citrus clementina cDNA clone C01003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286967 ID=CX286967; Name=CX286967; organism=Citrus clementina; type=EST; length=623bp
AATGGCAATGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTCCC
TTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCTCA
TTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACCCC
AAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAA
CTGACCTCAAGAAATACGTCAAATCGAGGCTTCCCGGTGGCTTTGCGGCT
CAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGT
CCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGG
AATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTG
GTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGG
TGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTG
CATTGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGC
CTTCTGACCAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCA
TAAAGCCCGGAAAGCCCCACAAT
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