CX286985

Overview
NameCX286985
Unique NameCX286985
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: ERBB4_HUMAN (Receptor tyrosine-protein kinase erbB-4 OS=Homo sapiens GN=ERBB4 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 65/210 (30.95%), Postives = 110/210 (52.38%), Query Frame = 1
Query:   52 ILGRGGFGKVYKGR-LADGSLV----AVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPP---SQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTT-AVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELIT-GQRAFD 651
            +LG G FG VYKG  + +G  V    A+K L E   P   ++F  E  +++   H +L+RL G C++PT + LV   M +G +   + E      SQL L+W       +  A+G+ YL +    +++HRD+ A N+L+       + DFGLA+L++  +        +  I  +A E +   K + ++DV+ YG+ + EL+T G + +D
Sbjct:  723 VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLEYVHEHKDNIGSQLLLNW------CVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYD 922          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: RIPK4_HUMAN (Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 66/210 (31.43%), Postives = 102/210 (48.57%), Query Frame = 1
Query:   37 FSNKNILGRGGFGKVYKGRLADGSL-VAVKRLKEERTPGGE-LQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTT--AVRGTIGHIAPEYL--STGKSSEKTDVFGYGIMLLELITGQRAF 648
            F+    +G GGFG+VYK R       +A+K          E ++   E + + MA  R +L + G C  P    LV  YM  GS+   L   P     L W  R RI   +A G+++LH    P ++H D+K ANILLD  +   + DFGLAK      +H  +   + GTI ++ PE +   +     K DV+ + I++  ++T ++ F
Sbjct:   22 FTGWEKVGSGGFGQVYKVRHVHWKTWLAIKCSPSLHVDDRERMELLEEAKKMEMAKFRYILPVYGICREPVG--LVMEYMETGSLEKLLASEP-----LPWDLRFRIIHETAVGMNFLHCMAPP-LLHLDLKPANILLDAHYHVKISDFGLAKCNGLSHSHDLSMDGLFGTIAYLPPERIREKSRLFDTKHDVYSFAIVIWGVLTQKKPF 223          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: FPS_AVISP (Tyrosine-protein kinase transforming protein Fps OS=Avian sarcoma virus (strain PRCII) GN=V-FPS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 63/195 (32.31%), Postives = 98/195 (50.26%), Query Frame = 1
Query:   55 LGRGGFGKVYKGRL-ADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHD-HCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD---YKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLE 624
            +GRG FG+V+ GRL AD + VAVK  +E   P  + +F  E  ++    H N++RL G C       +V   +  G   S LR + P    L      ++   +A G+ YL   HC    IHRD+ A N L+ E+    + DFG+++  +   Y  T     +   +   APE L+ G+ S ++DV+ +GI+L E
Sbjct:  278 IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPELKAKFLQEARILKQYNHPNIVRLIGVCTQKQPIYIVMELVQGGDFLSFLRSKGPH---LKMKELIKMMENAAAGMEYLESKHC----IHRDLAARNCLVTEKNTLKISDFGMSRQEEDGVYASTGGMKQI--PVKWTAPEALNYGRYSSESDVWSFGILLWE 463          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: FGFR4_RAT (Fibroblast growth factor receptor 4 OS=Rattus norvegicus GN=Fgfr4 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 67/215 (31.16%), Postives = 104/215 (48.37%), Query Frame = 1
Query:   55 LGRGGFGKVYKG--------RLADGSLVAVKRLKEERTPGGELQFQTEVEMISM-AVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPP------------SQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTA-VRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELIT 633
            LG G FG+V +         R    S VAVK LK+  +        +E+EM+ +   H+N++ L G C       ++  Y A G++   LR R P            S+ PL +P     A   ARG+ YL      K IHRD+ A N+L+ E+    + DFGLA+ + + D +  T+  R  +  +APE L     + ++DV+ +GI+L E+ T
Sbjct:  471 LGEGCFGQVVRAEALGMDSSRPDQTSTVAVKMLKDNASDKDLADLISEMEMMKLIGRHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPALVSCAYQVARGMQYLESR---KCIHRDLAARNVLVTEDDVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILLWEIFT 682          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: FES_FSVGA (Tyrosine-protein kinase transforming protein Fes OS=Feline sarcoma virus (strain Gardner-Arnstein) GN=V-FES PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.872e-17
Identity = 61/192 (31.77%), Postives = 97/192 (50.52%), Query Frame = 1
Query:   55 LGRGGFGKVYKGRL-ADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGT-IGHIAPEYLSTGKSSEKTDVFGYGIMLLE 624
            +GRG FG+V+ GRL AD +LVAVK  +E   P  + +F  E +++    H N++RL G C       +V   +  G   + LR        L   T  ++   +A G+ YL   C    IHRD+ A N L+ E+    + DFG+++         +  +R   +   APE L+ G+ S ++DV+ +GI+L E
Sbjct:  354 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDIKAKFLQEAKILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGAR---LRMKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREAADGIYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWE 539          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 66/227 (29.07%), Postives = 108/227 (47.58%), Query Frame = 1
Query:   13 ELQVATDSFSNKNILGRGGF---GKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQ-----RAFDLARLAN 669
            +L+ AT++FS+ NI+   G      VYKGRL +   +AVK+  +   P  + QF  E   +    H  L  L G+C    ERLLV  +M N ++A  L         ++W  R R+    A  L Y      P  ++ D+ A  +L DE+ +  +  FGL K      ++ T      + +  PEYL  G+ + ++  + +G +LL+L++G+      A D+ R  N
Sbjct:   65 DLKAATNNFSSDNIVSESGEKAPNLVYKGRLQNRRWIAVKKFTKMAWPEPK-QFAEEAWGVGKLRHNRLANLIGYCCDGDERLLVAEFMPNDTLAKHLFHW--ENQTIEWAMRLRVGYYIAEALDYCSTEGRP--LYHDLNAYRVLFDEDGDPRLSCFGLMKNSRDGKSYST-----NLAYTPPEYLRNGRVTPESVTYSFGTVLLDLLSGKHIPPSHALDMIRGKN 281          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: EPHB1_HUMAN (Ephrin type-B receptor 1 OS=Homo sapiens GN=EPHB1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 63/210 (30.00%), Postives = 106/210 (50.48%), Query Frame = 1
Query:   46 KNILGRGGFGKVYKGRLADGS----LVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM--DYKDTHVTTAVRGTI--GHIAPEYLSTGKSSEKTDVFGYGIMLLELIT-GQRAF 648
            + ++G G FG+VYKGRL         VA+K LK   +      F +E  ++    H N++RL G        +++  +M NG++ S LR+       +      R   G A G+ YL    +   +HRD+ A NIL++      V DFGL++ +  D  D   T+++ G I     APE ++  K +  +DV+ YGI++ E+++ G+R +
Sbjct:  622 EEVIGAGEFGEVYKGRLKLPGKREIYVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR---GIAAGMKYL---AEMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSFGERPY 825          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: EPHB1_CHICK (Ephrin type-B receptor 1 (Fragment) OS=Gallus gallus GN=EPHB1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 63/210 (30.00%), Postives = 106/210 (50.48%), Query Frame = 1
Query:   46 KNILGRGGFGKVYKGRLADGS----LVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM--DYKDTHVTTAVRGTI--GHIAPEYLSTGKSSEKTDVFGYGIMLLELIT-GQRAF 648
            + ++G G FG+VYKGRL         VA+K LK   +      F +E  ++    H N++RL G        +++  +M NG++ S LR+       +      R   G A G+ YL    +   +HRD+ A NIL++      V DFGL++ +  D  D   T+++ G I     APE ++  K +  +DV+ YGI++ E+++ G+R +
Sbjct:  622 EEVIGAGEFGEVYKGRLKLPGKREIYVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR---GIAAGMKYL---AEMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSFGERPY 825          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: EPB1B_XENLA (Ephrin type-B receptor 1-B (Fragment) OS=Xenopus laevis GN=ephb1-B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 64/210 (30.48%), Postives = 106/210 (50.48%), Query Frame = 1
Query:   46 KNILGRGGFGKVYKGRLADGSL----VAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM--DYKDTHVTTAVRGTI--GHIAPEYLSTGKSSEKTDVFGYGIMLLELIT-GQRAF 648
            + ++G G FG+VYKGRL   S     VA+K LK   +      F +E  ++    H N++RL G        +++  +M NG++ S LR+       +      R   G A G+ YL    +   +HRD+ A NIL++      V DFGL++ +  D  D   T+++ G I     APE +   K +  +DV+ YGI++ E+++ G+R +
Sbjct:  540 EEVIGAGEFGEVYKGRLKLPSKREISVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR---GIAAGMKYL---SEMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAPEAIRYRKFTSASDVWSYGIVMWEVMSYGERPY 743          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: ARKA_DICDI (Ankyrin repeat-containing protein kinase A OS=Dictyostelium discoideum GN=arkA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 55/192 (28.65%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   55 LGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELI 630
            +G G  GKV+KG +  G +VA+K LK          F  E  +++      ++ L G  + P +  LV  Y +NGS+   +R+ PPS     W            G++ LH    P+++HRD+K  N L++   +  V DFGL++     +       RGT  + APE     + +E++D++  GI++ E++
Sbjct: 1118 IGSGASGKVFKG-IYRGRVVAIKVLKSADDEMTREDFLKEFGVLASLESHTIVGLYGVVLEP-KICLVMEYCSNGSIYHSIRKNPPS-----WERFFSFVQQMLAGINALHQST-PQVLHRDIKTLNFLVNHNNKVKVADFGLSRFNTESNQETLNKTRGTSVYCAPEVFEGKEYNERSDMYSMGIVMWEIV 1301          
The following BLAST results are available for this feature:
BLAST of CX286985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ERBB4_HUMAN5.787e-1730.95Receptor tyrosine-protein kinase erbB-4 OS=Homo sa... [more]
RIPK4_HUMAN7.559e-1731.43Receptor-interacting serine/threonine-protein kina... [more]
FPS_AVISP7.559e-1732.31Tyrosine-protein kinase transforming protein Fps O... [more]
FGFR4_RAT7.559e-1731.16Fibroblast growth factor receptor 4 OS=Rattus norv... [more]
FES_FSVGA9.872e-1731.77Tyrosine-protein kinase transforming protein Fes O... [more]
Y4523_ARATH1.289e-1629.07Probable serine/threonine-protein kinase At4g35230... [more]
EPHB1_HUMAN1.289e-1630.00Ephrin type-B receptor 1 OS=Homo sapiens GN=EPHB1 ... [more]
EPHB1_CHICK1.289e-1630.00Ephrin type-B receptor 1 (Fragment) OS=Gallus gall... [more]
EPB1B_XENLA1.289e-1630.48Ephrin type-B receptor 1-B (Fragment) OS=Xenopus l... [more]
ARKA_DICDI1.289e-1628.65Ankyrin repeat-containing protein kinase A OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionC01003C10SK Veg1 Citrus clementina cDNA clone C01003C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286985 ID=CX286985; Name=CX286985; organism=Citrus clementina; type=EST; length=685bp
CTCGTGCCGCGAGAATTACAAGTTGCAACAGATAGTTTTAGCAATAAAAA
CATTCTGGGTAGAGGTGGGTTCGGTAAGGTCTACAAAGGACGCCTGGCAG
ATGGTTCACTGGTAGCTGTAAAAAGATTGAAAGAAGAGCGTACTCCTGGT
GGGGAGCTGCAGTTTCAGACTGAAGTAGAGATGATCAGTATGGCTGTACA
TCGTAATCTCCTTCGCTTGCGTGGCTTCTGTATGACACCAACTGAAAGGC
TGCTTGTTTATCCCTATATGGCAAATGGAAGTGTCGCATCTTGTTTAAGA
GAACGTCCCCCATCACAACTTCCTCTTGATTGGCCAACTCGGAAACGGAT
TGCTTTGGGGTCCGCTAGGGGTCTTTCGTATTTGCATGATCATTGTGATC
CAAAGATCATTCACCGTGATGTGAAAGCGGCTAACATTTTGTTGGATGAG
GAGTTTGAAGCTGTTGTTGGGGACTTTGGGTTGGCTAAACTTATGGACTA
CAAGGATACCCATGTCACTACGGCAGTCCGTGGCACCATTGGGCATATAG
CTCCAGAATACCTTTCTACTGGAAAATCTTCAGAGAAAACTGATGTCTTT
GGTTATGGGATTATGCTTCTAGAGCTAATCACTGGACAGAGAGCCTTTGA
TCTTGCTCGTCTGGCAAATGATGATGATGTCATGC
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