CX286985

Overview
NameCX286985
Unique NameCX286985
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286985_ssr668 microsatellite CX286985_ssr668:668..679. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: ERBB2_RAT (Receptor tyrosine-protein kinase erbB-2 OS=Rattus norvegicus GN=Erbb2 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 67/210 (31.90%), Postives = 109/210 (51.90%), Query Frame = 1
Query:   52 ILGRGGFGKVYKGR-LADGSLV----AVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRE---RPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDT-HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELIT-GQRAFD 651
            +LG G FG VYKG  + DG  V    A+K L+E  +P    +   E  +++      + RL G C+T T +L V   M  G +   +RE   R  SQ  L+W       +  A+G+SYL D    +++HRD+ A N+L+       + DFGLA+L+D  +T +     +  I  +A E +   + + ++DV+ YG+ + EL+T G + +D
Sbjct:  727 VLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVSRLLGICLTSTVQL-VTQLMPYGCLLDHVREHRGRLGSQDLLNW------CVQIAKGMSYLED---VRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILRRRFTHQSDVWSYGVTVWELMTFGAKPYD 926          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: EGFR_MOUSE (Epidermal growth factor receptor OS=Mus musculus GN=Egfr PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 65/216 (30.09%), Postives = 110/216 (50.93%), Query Frame = 1
Query:   37 FSNKNILGRGGFGKVYKGR-LADGSLV----AVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPP---SQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM--DYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELIT-GQRAFD 651
            F    +LG G FG VYKG  + +G  V    A+K L+E  +P    +   E  +++   + ++ RL G C+T T +L+    M  G +   +RE      SQ  L+W       +  A+G++YL D    +++HRD+ A N+L+       + DFGLAKL+  + K+ H     +  I  +A E +     + ++DV+ YG+ + EL+T G + +D
Sbjct:  714 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQ-LMPYGCLLDYVREHKDNIGSQYLLNW------CVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGG-KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 918          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: BLK_HUMAN (Tyrosine-protein kinase Blk OS=Homo sapiens GN=BLK PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 66/207 (31.88%), Postives = 103/207 (49.76%), Query Frame = 1
Query:   13 ELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELIT 633
            E ++   S      LG G FG+V+ G   +   VA+K LKE  T   E  F  E  ++    H  L+RL    +T     +V  YMA G +   L+    S+L L  P    ++   A G++Y+        IHRD++AANIL+ E     + DFGLA+++D + T      +  I   APE +  G  + K DV+ +G++L+E++T
Sbjct:  233 EWEIPRQSLRLVRKLGSGQFGEVWMGYYKNNMKVAIKTLKEG-TMSPEA-FLGEANVMKALQHERLVRLYAV-VTKEPIYIVTEYMARGCLLDFLKTDEGSRLSL--PRLIDMSAQIAEGMAYIERM---NSIHRDLRAANILVSEALCCKIADFGLARIIDSEYT-AQEGAKFPIKWTAPEAIHFGVFTIKADVWSFGVLLMEVVT 430          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: AURKC_MOUSE (Serine/threonine-protein kinase 13 OS=Mus musculus GN=Aurkc PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 64/206 (31.07%), Postives = 98/206 (47.57%), Query Frame = 1
Query:   55 LGRGGFGKVYKGRLADGS-LVAVKRL--KEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVR----GTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFD 651
            LGRG FG+VY  RL +   +VA+K L   E    G E Q + EVE+ +   HRN+LRL  +    T   L+  Y   G +   L+        LD      I    +  L+Y H+    K+IHRD+K  N+LL    E  + DFG +        H  +  R    GT+ ++ PE ++    +E  D++  G++  EL+ G+  F+
Sbjct:   22 LGRGKFGRVYLARLKENHFIVALKVLFKSEIEKEGLEHQLRREVEIQAHLQHRNILRLYNYFYDDTRIYLILEYAPGGELYKELQRHQK----LDQQRTATIIQELSDALTYCHEK---KVIHRDIKPENLLLGLNGEVKISDFGWS-------VHTPSLRRKTMCGTLDYLPPEMIAQKPYNEMVDLWCIGVLCYELLVGKPPFE 213          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: Y1143_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 61/218 (27.98%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   13 ELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER---------LLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQ 639
            EL+ AT++F  +N+ G     ++YKG L +G  V V+ +K ++    +   Q ++E++S   H +L+ + G C+   +           +V  Y++NGS+   L +    ++ L WP R  IA+G ARG+ +LH    P I   +++  N+LLDE            KL  Y     +  +   +G  +P    + +  EK DV+ +G++L+++ITG+
Sbjct:  439 ELEEATNNFDAENLCGE----QLYKGCLREGIAVTVRCIKLKQKNSTQNLAQ-QMEVLSKLRHMHLVSVLGHCIGTYQDHHPYAGSTIFIVQEYISNGSLRDYLTDWRKKEV-LKWPQRMSIAIGVARGIQFLHTGVAPGIFGNNLEIENVLLDETL--------TVKLSGY-----SIPLPSKVGAESP----SNEDGEKEDVYQFGVILIQIITGK 633          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: SRMS_MOUSE (Tyrosine-protein kinase Srms OS=Mus musculus GN=Srms PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 62/211 (29.38%), Postives = 98/211 (46.45%), Query Frame = 1
Query:    1 LVPRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELIT 633
            LV  E +     F  +  LG G FG+V++G       VAVK +K       +L    E+E +    H  L+RL   C       +V   M  G++   L       L L  P     A   A G+SYL +    +++HRD+ A N+L+ ++    V DFGLA+L+       ++  +  +   APE  +    S+K+DV+ +GI+L E+ T
Sbjct:  222 LVQDEWERPRSEFVLRRKLGEGFFGEVWEGLWLGSIPVAVKVIKSADMKLADLT--KEIEALKSLRHERLIRLHAICSLGEPVYIVTELMGKGNLQVYLGSSEGKALSL--PHLLGFACQVAEGMSYLEER---RVVHRDLAARNVLVGDDLTCKVADFGLARLLKDDVYSPSSGSKIPVKWTAPEAANYRVFSQKSDVWSFGILLYEVFT 425          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: PLK4_DROME (Serine/threonine-protein kinase PLK4 OS=Drosophila melanogaster GN=SAK PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 1
Query:   31 DSFSNKNILGRGGFGKVYKGR-LADGSLVAVKRLKEERTPGGEL--QFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRE--RPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKD-THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFD 651
            + +  +++LG+GGF  VYK R L     VA+K + ++   G  L  + + EVE+ S   H ++L+L  F        LV     NG +   +    RP ++       ++ +A     GL YLH H    I+HRD+  +N+LL  E    + DFGLA  +   D  H+T    GT  +I+PE +S        DV+  G ML  L+ G+  F+
Sbjct:   12 EDYEVQHLLGKGGFATVYKARCLHTHQDVAIKMIDKKLIQGTGLTNRVRQEVEIHSRLKHPSVLQLYTFFQDANYVYLVLELAHNGELHRYMNHIARPFTETEAASILKQVVA-----GLLYLHSH---NIMHRDISLSNLLLSREMHVKIADFGLATQLKRPDERHMTMC--GTPNYISPEVVSRTSHGLPADVWSVGCMLYTLLVGRPPFE 214          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: LTK_MOUSE (Leukocyte tyrosine kinase receptor OS=Mus musculus GN=Ltk PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 73/225 (32.44%), Postives = 112/225 (49.78%), Query Frame = 1
Query:    1 LVPRELQVATDSFSNKNILGRGGFGKVYKGRLA----DGSL--VAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR-ERP-PSQL-PLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLD---EEFEAVVGDFGLAKLMDYKDTHVTTAVRG--TIGHIAPEYLSTGKSSEKTDVFGYGIMLLELIT 633
            L P   +V+  + +    LG G FG+VY+G +     D S   VA+K L E  +   EL F  E  +IS   H+N++R  G       RL++   M+ G + S LR  RP P QL PL      ++A   A+G  YL ++     IHRD+ A N LL        A +GDFG+A+ + Y+ ++     R    +  + PE L  G  + KTD + +G++L E+ +
Sbjct:  494 LPPGLTEVSPANVTLLRALGHGAFGEVYEGLVTGLPGDSSPLPVAIKTLPELCSHQDELDFLMEALIISKFSHQNIVRCVGLSFRSAPRLILLELMSGGDMKSFLRHSRPHPGQLAPLTMQDLLQLAQDIAQGCHYLEEN---HFIHRDIAARNCLLSCSGASRVAKIGDFGMARDI-YQASYYRKGGRTLLPVKWMPPEALLEGLFTSKTDSWSFGVLLWEIFS 714          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: INSR_AEDAE (Insulin-like receptor OS=Aedes aegypti GN=InR PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 66/212 (31.13%), Postives = 102/212 (48.11%), Query Frame = 1
Query:   55 LGRGGFGKVYKGRLAD------GSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRE-RP-------PSQLPLDWPTRKRI---ALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRG--TIGHIAPEYLSTGKSSEKTDVFGYGIMLLELIT 633
            LG+G FG VYKG L            A+K + E  T   +  F  E  ++      +++RL G        L++   MANG + S LR  RP       PS  P   PT ++I   A+  A G++YL      K +HRD+ A N ++ ++    +GDFG+ + + Y+  +     +G   +  +APE L  G  S  +DVF YG++L E+ T
Sbjct: 1031 LGQGSFGMVYKGILTQLRGEKCNQPCAIKTVNESATAREKDSFLLEASVMKQFNTHHVVRLLGVVSQGDPTLVIMELMANGDLKSYLRRHRPDYENGEDPSPQP---PTLRQIIQMAIEIADGMAYLSAK---KFVHRDLAARNCMVADDMTVKIGDFGMTRDI-YETDYYRKGTKGFLPVRWMAPESLKDGIFSSSSDVFSYGVVLWEMAT 1235          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: FGR_HUMAN (Proto-oncogene tyrosine-protein kinase Fgr OS=Homo sapiens GN=FGR PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 66/211 (31.28%), Postives = 106/211 (50.24%), Query Frame = 1
Query:   19 QVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPG--GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL-LVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQR 642
            +++  S + +  LG G FG V+ G     + VAVK LK    PG      F  E +++ +  H  L++L  + +   E + +V  +M +GS+   L+   P    L  P    +A   A G++Y+        IHRD++AANIL+ E     + DFGLA+L+   + +     +  I   APE    G+ + K+DV+ +GI+L ELIT  R
Sbjct:  257 EISRSSITLERRLGTGCFGDVWLGTWNGSTKVAVKTLK----PGTMSPKAFLEEAQVMKLLRHDKLVQL--YAVVSEEPIYIVTEFMCHGSLLDFLKN--PEGQDLRLPQLVDMAAQVAEGMAYMERM---NYIHRDLRAANILVGERLACKIADFGLARLIKDDEYNPCQGSKFPIKWTAPEAALFGRFTIKSDVWSFGILLTELITKGR 456          
The following BLAST results are available for this feature:
BLAST of CX286985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ERBB2_RAT1.425e-1531.90Receptor tyrosine-protein kinase erbB-2 OS=Rattus ... [more]
EGFR_MOUSE1.425e-1530.09Epidermal growth factor receptor OS=Mus musculus G... [more]
BLK_HUMAN1.425e-1531.88Tyrosine-protein kinase Blk OS=Homo sapiens GN=BLK... [more]
AURKC_MOUSE1.425e-1531.07Serine/threonine-protein kinase 13 OS=Mus musculus... [more]
Y1143_ARATH1.862e-1527.98Probable LRR receptor-like serine/threonine-protei... [more]
SRMS_MOUSE1.862e-1529.38Tyrosine-protein kinase Srms OS=Mus musculus GN=Sr... [more]
PLK4_DROME1.862e-1530.99Serine/threonine-protein kinase PLK4 OS=Drosophila... [more]
LTK_MOUSE1.862e-1532.44Leukocyte tyrosine kinase receptor OS=Mus musculus... [more]
INSR_AEDAE1.862e-1531.13Insulin-like receptor OS=Aedes aegypti GN=InR PE=2... [more]
FGR_HUMAN1.862e-1531.28Proto-oncogene tyrosine-protein kinase Fgr OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC01003C10SK Veg1 Citrus clementina cDNA clone C01003C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286985 ID=CX286985; Name=CX286985; organism=Citrus clementina; type=EST; length=685bp
CTCGTGCCGCGAGAATTACAAGTTGCAACAGATAGTTTTAGCAATAAAAA
CATTCTGGGTAGAGGTGGGTTCGGTAAGGTCTACAAAGGACGCCTGGCAG
ATGGTTCACTGGTAGCTGTAAAAAGATTGAAAGAAGAGCGTACTCCTGGT
GGGGAGCTGCAGTTTCAGACTGAAGTAGAGATGATCAGTATGGCTGTACA
TCGTAATCTCCTTCGCTTGCGTGGCTTCTGTATGACACCAACTGAAAGGC
TGCTTGTTTATCCCTATATGGCAAATGGAAGTGTCGCATCTTGTTTAAGA
GAACGTCCCCCATCACAACTTCCTCTTGATTGGCCAACTCGGAAACGGAT
TGCTTTGGGGTCCGCTAGGGGTCTTTCGTATTTGCATGATCATTGTGATC
CAAAGATCATTCACCGTGATGTGAAAGCGGCTAACATTTTGTTGGATGAG
GAGTTTGAAGCTGTTGTTGGGGACTTTGGGTTGGCTAAACTTATGGACTA
CAAGGATACCCATGTCACTACGGCAGTCCGTGGCACCATTGGGCATATAG
CTCCAGAATACCTTTCTACTGGAAAATCTTCAGAGAAAACTGATGTCTTT
GGTTATGGGATTATGCTTCTAGAGCTAATCACTGGACAGAGAGCCTTTGA
TCTTGCTCGTCTGGCAAATGATGATGATGTCATGC
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