CX286985

Overview
NameCX286985
Unique NameCX286985
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286985_ssr668 microsatellite CX286985_ssr668:668..679. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: CRK41_ARATH (Cysteine-rich receptor-like protein kinase 41 OS=Arabidopsis thaliana GN=CRK41 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.023e-45
Identity = 96/212 (45.28%), Postives = 137/212 (64.62%), Query Frame = 1
Query:   16 LQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD---YKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQR 642
            +++AT+ FS  N LG GGFG VYKG L  G  +AVKRL   ++  G+ +F  EV +++   HRNL+RL GFC+   ER+L+Y +  N S+   + +     + LDW TR RI  G ARGL YLH+    KI+HRD+KA+N+LLD+     + DFG+AKL D      T  T+ V GT G++APEY  +G+ S KTDVF +G+++LE+I G++
Sbjct:  337 IRLATNDFSRDNQLGEGGFGAVYKGVLDYGEEIAVKRLSM-KSGQGDNEFINEVSLVAKLQHRNLVRLLGFCLQGEERILIYEFFKNTSLDHYIFDSNRRMI-LDWETRYRIISGVARGLLYLHEDSRFKIVHRDMKASNVLLDDAMNPKIADFGMAKLFDTDQTSQTRFTSKVAGTYGYMAPEYAMSGEFSVKTDVFSFGVLVLEIIKGKK 546          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.462e-44
Identity = 95/218 (43.58%), Postives = 134/218 (61.47%), Query Frame = 1
Query:   10 RELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGG------ELQFQTEVEMISMAVHRNLLRLRGFC--MTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQ 639
            +++  AT  F +  I+GRG  G VYK  +  G  +AVK+L+  R          +  F+ E+  +    HRN++RL  FC        LL+Y YM+ GS+   L       +  DWPTR  IALG+A GL+YLH  C P+IIHRD+K+ NIL+DE FEA VGDFGLAK++D   +   +AV G+ G+IAPEY  T K +EK D++ +G++LLEL+TG+
Sbjct:  810 KDILEATKGFHDSYIVGRGACGTVYKAVMPSGKTIAVKKLESNREGNNNNSNNTDNSFRAEILTLGKIRHRNIVRLYSFCYHQGSNSNLLLYEYMSRGSLGELLHGGKSHSM--DWPTRFAIALGAAEGLAYLHHDCKPRIIHRDIKSNNILIDENFEAHVGDFGLAKVIDMPLSKSVSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELLTGK 1025          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: WAKLQ_ARATH (Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.462e-44
Identity = 93/227 (40.97%), Postives = 142/227 (62.56%), Query Frame = 1
Query:   10 RELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR-ERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDT-----HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLAND 672
            RE+  AT++FS  N++G GGFG+V+K  L DG++ A+KR K   T G + Q   EV ++    HR+L+RL G C+     LL+Y ++ NG++   L      +  PL W  R +IA  +A GL+YLH    P I HRDVK++NILLDE+  A V DFGL++L+D  +T     H+ T  +GT+G++ PEY    + ++K+DV+ +G++LLE++T ++A D  R   D
Sbjct:  354 REITKATNNFSKDNLIGTGGFGEVFKAVLEDGTITAIKRAKLNNTKGTD-QILNEVRILCQVNHRSLVRLLGCCVDLELPLLIYEFIPNGTLFEHLHGSSDRTWKPLTWRRRLQIAYQTAEGLAYLHSAAQPPIYHRDVKSSNILLDEKLNAKVSDFGLSRLVDLTETANNESHIFTGAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLLEMVTSKKAIDFTREEED 579          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: WAKLH_ARATH (Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.462e-44
Identity = 91/217 (41.94%), Postives = 137/217 (63.13%), Query Frame = 1
Query:   10 RELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLAR 660
            REL+ AT++FS+  ILG+GG G VYKG L DG +VAVK+ K       E +F  EV ++S   HRN+++L G C+     +LVY ++ NG++   L +     +   W  R RIA+  A  LSYLH      I HRDVK+ NI+LDE++ A V DFG ++ +    TH+TT V GT+G++ PEY  + + ++K+DV+ +G++L+ELITG+++    R
Sbjct:  438 RELEKATENFSSNRILGQGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLE-EFINEVVILSQINHRNIVKLLGCCLETKVPVLVYEFIPNGNLFEHLHDEFDENIMATWNIRLRIAIDIAGALSYLHSSASSPIYHRDVKSTNIMLDEKYRAKVSDFGTSRTVTVDHTHLTTVVSGTVGYMDPEYFQSSQFTDKSDVYSFGVVLVELITGEKSISFLR 653          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.462e-44
Identity = 93/214 (43.46%), Postives = 137/214 (64.02%), Query Frame = 1
Query:   16 LQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPG-GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQL-PLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFD 651
            L+  T++FS+ NILG GGFG VYKG L DG+ +AVKR++     G G  +F++E+ +++   HR+L+ L G+C+   E+LLVY YM  G+++  L E     L PL W  R  +AL  ARG+ YLH       IHRD+K +NILL ++  A V DFGL +L       + T + GT G++APEY  TG+ + K DV+ +G++L+ELITG+++ D
Sbjct:  581 LRSVTNNFSSDNILGSGGFGVVYKGELHDGTKIAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWSEEGLKPLLWKQRLTLALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRKSLD 794          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.909e-44
Identity = 97/210 (46.19%), Postives = 133/210 (63.33%), Query Frame = 1
Query:   25 ATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL-MDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFD 651
            AT+SF     +G GGFGKVYKG L DG+ VAVKR    ++  G  +F+TE+EM+S   HR+L+ L G+C    E +LVY YM NG++ S L       L L W  R  I +GSARGL YLH      +IHRDVK+ANILLDE   A V DFGL+K   +   THV+TAV+G+ G++ PEY    + +EK+DV+ +G+++ E++  +   D
Sbjct:  478 ATNSFDENRAIGVGGFGKVYKGELHDGTKVAVKRANP-KSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTLKSHLYGS--GLLSLSWKQRLEICIGSARGLHYLHTGDAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVMFEVLCARPVID 684          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: WAKLF_ARATH (Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.493e-44
Identity = 94/221 (42.53%), Postives = 137/221 (61.99%), Query Frame = 1
Query:   10 RELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQ-LPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLAN 669
            +EL+ ATD+FS   +LG+GG G VYKG LA+G +VAVKR K     G   +F  EV ++S   HRN+++L G C+     +LVY Y+ NG +   L E+  S    + W  R RIA+  A  LSY+H      I HRD+K  NILLDE++ A V DFG ++ +    TH+TT V GT G++ PEY  + + ++K+DV+ +G++L+ELITG++     R+ N
Sbjct:  423 KELKKATDNFSMNRVLGQGGQGTVYKGMLAEGRIVAVKRSKVVGE-GKMEEFINEVVLLSQINHRNIVKLLGCCLGTEVPVLVYEYIPNGDLFKRLHEKSESNDYTMTWEVRLRIAIEIAGALSYMHSAASIPIYHRDIKTTNILLDEKYRAKVSDFGTSRSITIAQTHLTTLVAGTFGYMDPEYFLSSQYTDKSDVYSFGVVLVELITGEKPLSRKRIGN 642          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.493e-44
Identity = 96/218 (44.04%), Postives = 133/218 (61.01%), Query Frame = 1
Query:    1 LVPRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTA-VRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFD 651
            L+  ++  ATD+  +K I+GRG  G VY+  L  G   AVK+L            + E+E I +  HRNL+RL  F M   + L++Y YM NGS+   L      +  LDW  R  IALG + GL+YLH  C P IIHRD+K  NIL+D + E  +GDFGLA+++D  D+ V+TA V GT G+IAPE       S+++DV+ YG++LLEL+TG+RA D
Sbjct:  782 LLLNKVLAATDNLDDKYIIGRGAHGVVYRASLGSGEEYAVKKLIFAEHIRANQNMKREIETIGLVRHRNLIRLERFWMRKEDGLMLYQYMPNGSLHDVLHRGNQGEAVLDWSARFNIALGISHGLAYLHHDCHPPIIHRDIKPENILMDSDMEPHIGDFGLARILD--DSTVSTATVTGTTGYIAPENAYKTVRSKESDVYSYGVVLLELVTGKRALD 997          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.493e-44
Identity = 99/224 (44.20%), Postives = 144/224 (64.29%), Query Frame = 1
Query:   13 ELQVATDSFSNKNILGRGGFGKVYKGRLADGSL----------VAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKD-THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFD 651
            EL+ AT +F   +++G GGFG V+KG + + SL          +AVKRL +E   G   ++  E+  +    H NL++L G+C+    RLLVY +M  GS+ + L  R     PL W TR R+ALG+ARGL++LH +  P++I+RD KA+NILLD  + A + DFGLA+     D +HV+T V GT G+ APEYL+TG  S K+DV+ +G++LLEL++G+RA D
Sbjct:   60 ELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHR-EWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLFRRGTFYQPLSWNTRVRMALGAARGLAFLH-NAQPQVIYRDFKASNILLDSNYNAKLSDFGLARDGPMGDNSHVSTRVMGTQGYAAPEYLATGHLSVKSDVYSFGVVLLELLSGRRAID 281          
BLAST of CX286985 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.493e-44
Identity = 98/211 (46.45%), Postives = 136/211 (64.45%), Query Frame = 1
Query:   25 ATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLP-LDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL-MDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFD 651
            AT++F     +G GGFGKVYKG L DG+ VAVKR    ++  G  +F+TE+EM+S   HR+L+ L G+C    E +L+Y YM NG+V S L     S LP L W  R  I +G+ARGL YLH      +IHRDVK+ANILLDE F A V DFGL+K   +   THV+TAV+G+ G++ PEY    + ++K+DV+ +G++L E++  +   D
Sbjct:  481 ATNNFDESRNIGVGGFGKVYKGELNDGTKVAVKR-GNPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENGTVKSHLYG---SGLPSLTWKQRLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVID 687          
The following BLAST results are available for this feature:
BLAST of CX286985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CRK41_ARATH5.023e-4545.28Cysteine-rich receptor-like protein kinase 41 OS=A... [more]
Y2317_ARATH1.462e-4443.58Probable leucine-rich repeat receptor-like protein... [more]
WAKLQ_ARATH1.462e-4440.97Wall-associated receptor kinase-like 20 OS=Arabido... [more]
WAKLH_ARATH1.462e-4441.94Wall-associated receptor kinase-like 9 OS=Arabidop... [more]
TMK1_ARATH1.462e-4443.46Probable receptor protein kinase TMK1 OS=Arabidops... [more]
Y5597_ARATH1.909e-4446.19Probable receptor-like protein kinase At5g59700 OS... [more]
WAKLF_ARATH2.493e-4442.53Wall-associated receptor kinase-like 6 OS=Arabidop... [more]
PEPR2_ARATH2.493e-4444.04Leucine-rich repeat receptor-like protein kinase P... [more]
NAK_ARATH2.493e-4444.20Probable serine/threonine-protein kinase NAK OS=Ar... [more]
HERK_ARATH2.493e-4446.45Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC01003C10SK Veg1 Citrus clementina cDNA clone C01003C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286985 ID=CX286985; Name=CX286985; organism=Citrus clementina; type=EST; length=685bp
CTCGTGCCGCGAGAATTACAAGTTGCAACAGATAGTTTTAGCAATAAAAA
CATTCTGGGTAGAGGTGGGTTCGGTAAGGTCTACAAAGGACGCCTGGCAG
ATGGTTCACTGGTAGCTGTAAAAAGATTGAAAGAAGAGCGTACTCCTGGT
GGGGAGCTGCAGTTTCAGACTGAAGTAGAGATGATCAGTATGGCTGTACA
TCGTAATCTCCTTCGCTTGCGTGGCTTCTGTATGACACCAACTGAAAGGC
TGCTTGTTTATCCCTATATGGCAAATGGAAGTGTCGCATCTTGTTTAAGA
GAACGTCCCCCATCACAACTTCCTCTTGATTGGCCAACTCGGAAACGGAT
TGCTTTGGGGTCCGCTAGGGGTCTTTCGTATTTGCATGATCATTGTGATC
CAAAGATCATTCACCGTGATGTGAAAGCGGCTAACATTTTGTTGGATGAG
GAGTTTGAAGCTGTTGTTGGGGACTTTGGGTTGGCTAAACTTATGGACTA
CAAGGATACCCATGTCACTACGGCAGTCCGTGGCACCATTGGGCATATAG
CTCCAGAATACCTTTCTACTGGAAAATCTTCAGAGAAAACTGATGTCTTT
GGTTATGGGATTATGCTTCTAGAGCTAATCACTGGACAGAGAGCCTTTGA
TCTTGCTCGTCTGGCAAATGATGATGATGTCATGC
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