CX286996

Overview
NameCX286996
Unique NameCX286996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: ACSF_PROMA (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus GN=acsF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  342 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            + E LLTPRFYTT+F++     + EI +K    +FEA+ +E + DYN  HF R K   E  D++    + ++  +L RS  +EFSGFLL+KE+  R
Sbjct:   21 LDENLLTPRFYTTEFEKAAKT-DLEIARK----DFEAMFKEMEADYNLKHFDR-KASLERLDELSPEDKAVYESYLVRSVVSEFSGFLLFKEISNR 110          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: ACSF_PROM3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9303) GN=acsF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  342 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            + + LLTPRFYTT+FD+      T+++  + + +FEA+ +E + DYN  HF R    +  AD +    + I+  +L RS  +EFSGFLL+KE+  R
Sbjct:   23 LDDNLLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDRKASLERLAD-LSPEDKAIYESYLVRSVVSEFSGFLLFKEISNR 112          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: ACSF_PROMM (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9313) GN=acsF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  342 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            + + LLTPRFYTT+FD+      T+++  + + +FEA+ +E + DYN  HF R K   E   ++    + I+  +L RS  +EFSGFLL+KE+  R
Sbjct:   23 LDDNLLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDR-KASLERLSELSPEDKAIYESYLVRSVVSEFSGFLLFKEISNR 112          
BLAST of CX286996 vs. ExPASy Swiss-Prot
Match: ACSF_PROM4 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9211) GN=acsF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  342 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 629
            + E LLTPRFYTT+FD+       + + ++ + +F+A+  E + DYN  HF R        +++    + ++  +L RS  +EFSGFLL+KE+  R
Sbjct:   23 LDENLLTPRFYTTEFDKA-----AKTDLEIARRDFQAMFNEMEADYNLKHFDRKASLARL-NELSPKDKSVYESYLVRSVVSEFSGFLLFKEISNR 112          
The following BLAST results are available for this feature:
BLAST of CX286996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACSF_PROMA4.748e-1241.67Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROM36.201e-1239.58Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMM2.356e-1139.58Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROM46.856e-1135.42Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

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Properties
Property NameValue
Genbank descriptionC01003D10SK Veg1 Citrus clementina cDNA clone C01003D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286996 ID=CX286996; Name=CX286996; organism=Citrus clementina; type=EST; length=630bp
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGCCTCGTGCCGAATTCGGCACGAGGTTGAAA
GCCACTCAGTTACTCTCTAGTTCCTCTCCTGGTTCCAGAAATGGCAGCTG
AGATGGCACTGGTCAAACCGATTAGCAAATTCAGCACCATCGCCACCACT
ACTAAGCCTAGGTTCAGCTACCCGAAAGCAACATGTACATCTCTGAGCAC
AAGATTTTGTACAATCAAAATGTCAGCAACTTCAGAGCAAGCGGCTGCTG
CCACTGCCCAAAAGCCAAGCAAGAAATCAAACAAAACTGCTATCAAGGAG
ACCCTTCTGACACCAAGGTTTTATACAACAGATTTTGATGAAATGGAGAC
CCTTTTCAACACTGAGATCAACAAGAAGCTCAACCAGGCTGAATTTGAGG
CATTGCTTCAAGAATTCAAGACTGATTATAACCAGACTCACTTTGTGAGG
AACAAGGAGTTCAAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAGGCA
GATCTTTGTTGAGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTGGTT
TCCTTCTTTACAAAGAGCTCGGAAGGAGAC
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