CX287002

Overview
NameCX287002
Unique NameCX287002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PSEU2 (Cyanate hydratase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=cynS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.724e-14
Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPY 481
            S   R+     +LQA K     ++  +AE TGL+ VYV   L  Q  L P+   ++ A    L  + + E+   P+R    ++  +PT+YR +E V  +G ++K +++E+FGDGI SAI+F                 IT DGK+LPY
Sbjct:    7 SRAPRQHLTERVLQA-KTAKNLTWAGLAEGTGLSVVYVTAALLGQHPL-PQAVAEVVAERLGLDRDAVAELQTIPLRGNVEDVSSDPTIYRFHEMVQVYGTTLKALVHEQFGDGIISAINFKLDIKKVDDPEGGERAVITLDGKFLPY 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PSEPW (Cyanate hydratase OS=Pseudomonas putida (strain W619) GN=cynS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ ++  + +  +T ++   K     SF QI + TGL+  +V   L  Q  L PE+A K+     +L  + +  +   P+R S+   +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQTQATRTARQELTEVIILAKARKDLSFAQIVDGTGLSEAFVTAALLGQHPL-PESAAKVVGDKLDLDADQVALLQSMPVRGSFFDGVPSDPTIYRFYEMMSVYGTTLKALVHEKFGDGIISAINFKLDIKKVEDPDGGHRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_SERP5 (Cyanate hydratase OS=Serratia proteamaculans (strain 568) GN=cynS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 2
Query:   44 TSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +S + ++T+ +   K     +F  I + TGL+  +V   L  Q  L PE A ++ A   +L ++ I  +   P+R   P  +  +PT+YR  E V  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    8 SSPRETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPL-PEQAARVVAEKLDLDEDAIRLLQTIPLRGSIPGGVPTDPTIYRFYEMVQIYGSTLKALVHEQFGDGIISAINFKLDIKKVPDPDGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURPS (Cyanate hydratase OS=Burkholderia pseudomallei GN=cynS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S+++R++    +++A  R++  +F QI E TGL+  +    L  Q  L P  A ++ AA  +L D+    +   P+R   P  +  +PT+YR  E V  +G ++K +I+E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQSAREALAERIVEAKTRKN-LTFEQINEGTGLSVAFTTAALLGQHPL-PADAARVVAAKLDLDDDAQRLLQTIPVRGSIPGGVPTDPTIYRFYEIVQVYGSTLKALIHEQFGDGIVSAINFKLDIKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURP0 (Cyanate hydratase OS=Burkholderia pseudomallei (strain 1106a) GN=cynS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S+++R++    +++A  R++  +F QI E TGL+  +    L  Q  L P  A ++ AA  +L D+    +   P+R   P  +  +PT+YR  E V  +G ++K +I+E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQSAREALAERIVEAKTRKN-LTFEQINEGTGLSVAFTTAALLGQHPL-PADAARVVAAKLDLDDDAQRLLQTIPVRGSIPGGVPTDPTIYRFYEIVQVYGSTLKALIHEQFGDGIVSAINFKLDIKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURP6 (Cyanate hydratase OS=Burkholderia pseudomallei (strain 668) GN=cynS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S++ R++    +++A  R++  +F QI E TGL+  +    L  Q  L P  A ++ AA  +L D+    +   P+R   P  +  +PT+YR  E V  +G ++K +I+E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQSPREALAERIVEAKTRKN-LTFEQINEGTGLSVAFTTAALLGQHPL-PADAARVVAAKLDLDDDAQRLLQTIPVRGSIPGGVPTDPTIYRFYEIVQVYGSTLKALIHEQFGDGIVSAINFKLDIKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURMS (Cyanate hydratase OS=Burkholderia mallei (strain SAVP1) GN=cynS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S++ R++    +++A  R++  +F QI E TGL+  +    L  Q  L P  A ++ AA  +L D+    +   P+R   P  +  +PT+YR  E V  +G ++K +I+E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQSPREALAERIVEAKTRKN-LTFEQINEGTGLSVAFTTAALLGQHPL-PADAARVVAAKLDLDDDAQRLLQTIPVRGSIPGGVPTDPTIYRFYEIVQVYGSTLKALIHEQFGDGIVSAINFKLDIKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURMA (Cyanate hydratase OS=Burkholderia mallei GN=cynS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S++ R++    +++A  R++  +F QI E TGL+  +    L  Q  L P  A ++ AA  +L D+    +   P+R   P  +  +PT+YR  E V  +G ++K +I+E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQSPREALAERIVEAKTRKN-LTFEQINEGTGLSVAFTTAALLGQHPL-PADAARVVAAKLDLDDDAQRLLQTIPVRGSIPGGVPTDPTIYRFYEIVQVYGSTLKALIHEQFGDGIVSAINFKLDIKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURM9 (Cyanate hydratase OS=Burkholderia mallei (strain NCTC 10229) GN=cynS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S++ R++    +++A  R++  +F QI E TGL+  +    L  Q  L P  A ++ AA  +L D+    +   P+R   P  +  +PT+YR  E V  +G ++K +I+E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQSPREALAERIVEAKTRKN-LTFEQINEGTGLSVAFTTAALLGQHPL-PADAARVVAAKLDLDDDAQRLLQTIPVRGSIPGGVPTDPTIYRFYEIVQVYGSTLKALIHEQFGDGIVSAINFKLDIKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURM7 (Cyanate hydratase OS=Burkholderia mallei (strain NCTC 10247) GN=cynS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S++ R++    +++A  R++  +F QI E TGL+  +    L  Q  L P  A ++ AA  +L D+    +   P+R   P  +  +PT+YR  E V  +G ++K +I+E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQSPREALAERIVEAKTRKN-LTFEQINEGTGLSVAFTTAALLGQHPL-PADAARVVAAKLDLDDDAQRLLQTIPVRGSIPGGVPTDPTIYRFYEIVQVYGSTLKALIHEQFGDGIVSAINFKLDIKKVDDPEGGSRAVITLDGKYLP 152          
The following BLAST results are available for this feature:
BLAST of CX287002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CYNS_PSEU23.724e-1433.11Cyanate hydratase OS=Pseudomonas syringae pv. syri... [more]
CYNS_PSEPW6.352e-1430.72Cyanate hydratase OS=Pseudomonas putida (strain W6... [more]
CYNS_SERP58.296e-1432.19Cyanate hydratase OS=Serratia proteamaculans (stra... [more]
CYNS_BURPS8.296e-1433.78Cyanate hydratase OS=Burkholderia pseudomallei GN=... [more]
CYNS_BURP08.296e-1433.78Cyanate hydratase OS=Burkholderia pseudomallei (st... [more]
CYNS_BURP61.415e-1333.78Cyanate hydratase OS=Burkholderia pseudomallei (st... [more]
CYNS_BURMS1.415e-1333.78Cyanate hydratase OS=Burkholderia mallei (strain S... [more]
CYNS_BURMA1.415e-1333.78Cyanate hydratase OS=Burkholderia mallei GN=cynS P... [more]
CYNS_BURM91.415e-1333.78Cyanate hydratase OS=Burkholderia mallei (strain N... [more]
CYNS_BURM71.415e-1333.78Cyanate hydratase OS=Burkholderia mallei (strain N... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01003E05SK Veg1 Citrus clementina cDNA clone C01003E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287002 ID=CX287002; Name=CX287002; organism=Citrus clementina; type=EST; length=617bp
CGCACGAGGGCTAGAGTGTTTTGTGATCGAAATGGAATCAGAAACGAGCA
GGAAATCGAGCGTGACAAACCTGCTGCAAGCCGTGAAACGAGAATCCGGT
AAGTCATTTAATCAGATTGCAGAAGAGACAGGGCTGACAAACGTCTACGT
TGCGCAGCTACTCAGACGCCAAGCGCAGCTCAAGCCCGAAACTGCCCCCA
AGCTACGGGCAGCCCTGCCCGAGCTGCCCGATGAGCTTATCCACGAGATG
ATGAGACCGCCAATGAGATCGTATGACCCGAACTTGATCCAGGAACCCAC
CGTTTATAGGTTAAACGAAGCGGTTATGCATTTTGGTGAGAGTATTAAGG
AAATTATCAATGAGGAGTTTGGTGATGGCATCACGTCGGCTATAGACTTT
TACTGCTCTGTTGACAAAGTTAAAGGTGTGGATGGGAAAGATCGTGTGGT
CATTACTTTTGATGGAAAATATTTGCCTTATAGTGAGCAGAAGTCGGAGC
ACATGGTTTCAAGACTACAACAGCAGTGAAGTTAATCCATTTCCTACCTG
GTGCAGATTCTATACATGCTTAATACTTATTGTACGAGTGAACTCCCTGG
AGCTACCATAGTTGGAT
back to top