CX287002

Overview
NameCX287002
Unique NameCX287002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig19 contig Ccv1_Contig19:1..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURCH (Cyanate hydratase OS=Burkholderia cenocepacia (strain HI2424) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S+T+R +    ++ A  R++  SF Q+ E TGL+  +V   L  Q  L P  A ++ A    L D+ +  +   P+R S D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQTARHALAETVVLAKARKN-LSFAQLTEGTGLSEAFVTAALLGQHAL-PADAARVVADKLGLDDDAVLLLQMIPLRGSIDDRVPTDPTIYRFYEMLQVYGTTLKALVHEKFGDGIISAINFRLDVKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURCC (Cyanate hydratase OS=Burkholderia cenocepacia (strain MC0-3) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S+T+R +    ++ A  R++  SF Q+ E TGL+  +V   L  Q  L P  A ++ A    L D+ +  +   P+R S D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQTARHALAETVVLAKARKN-LSFAQLTEGTGLSEAFVTAALLGQHAL-PADAARVVADKLGLDDDAVLLLQMIPLRGSIDDRVPTDPTIYRFYEMLQVYGTTLKALVHEKFGDGIISAINFRLDVKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURCA (Cyanate hydratase OS=Burkholderia cenocepacia (strain AU 1054) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S+T+R +    ++ A  R++  SF Q+ E TGL+  +V   L  Q  L P  A ++ A    L D+ +  +   P+R S D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQTARHALAETVVLAKARKN-LSFAQLTEGTGLSEAFVTAALLGQHAL-PADAARVVADKLGLDDDAVLLLQMIPLRGSIDDRVPTDPTIYRFYEMLQVYGTTLKALVHEKFGDGIISAINFRLDVKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_SYNP6 (Cyanate hydratase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 2
Query:   56 SSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSE 487
            S++T  L   K+  G +F ++ +  G   V++A +  RQ+   PE A KL  AL  L   L  E+  PP++   +P +  +P +YR  E +  +G  +K++I E+FGDGI SAIDF                 +T  GK+L Y +
Sbjct:    3 SAITEQLLKAKKAKGITFTELEQLLGRDEVWIASVFYRQSTASPEEAEKLLTALG-LDLALADELTTPPVKGCLEPVIPTDPLIYRFYEIMQVYGLPLKDVIQEKFGDGIMSAIDFTLD-VDKVEDPKGDRVKVTMCGKFLAYKK 145          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_SYNE7 (Cyanate hydratase OS=Synechococcus elongatus (strain PCC 7942) GN=cynS PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 2
Query:   56 SSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSE 487
            S++T  L   K+  G +F ++ +  G   V++A +  RQ+   PE A KL  AL  L   L  E+  PP++   +P +  +P +YR  E +  +G  +K++I E+FGDGI SAIDF                 +T  GK+L Y +
Sbjct:    3 SAITEQLLKAKKAKGITFTELEQLLGRDEVWIASVFYRQSTASPEEAEKLLTALG-LDLALADELTTPPVKGCLEPVIPTDPLIYRFYEIMQVYGLPLKDVIQEKFGDGIMSAIDFTLD-VDKVEDPKGDRVKVTMCGKFLAYKK 145          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PSEP1 (Cyanate hydratase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 46/143 (32.17%), Postives = 73/143 (51.05%), Query Frame = 2
Query:   53 KSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPY 481
            K  + +L+ A K   G S++ +A   G   V++A +         E A  L   L EL D++   +   P++ +D ++ Q+P +YRL E V  +G  +K++I E+FGDGI SAIDF                 +T +GK+LPY
Sbjct:    3 KLEMHHLIMAAKARKGLSWDDLANAVGKAPVWLASVCYGMNSAPLEVATHLCEVL-ELDDQVAATLTAFPVKGWDKSIPQDPLIYRLYEVVGVYGPPLKDVIQEKFGDGIMSAIDF-SMHVERIEDPKGDRVLLTLNGKFLPY 143          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PROMT (Cyanate hydratase OS=Prochlorococcus marinus (strain NATL2A) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 2
Query:   65 TNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSE 487
            T LL   K+E G +F  I    GL  V+VA L   Q+    E A KL   L  L  EL   +  PP++ S DP +  +P +YR  E +  +G  +K++I E+FGDGI SAIDF  +              +   GK+LPY +
Sbjct:    7 TQLLLKAKKEKGLTFADIGILLGLDEVWVASLFYGQSTASDEEADKLLTTLG-LGAELKEILTTPPVKGSLDPVIPTDPLIYRFYEIMQVYGMPMKDVIQEKFGDGIMSAIDFTIN-VDKVEDPKGDRVKVAMCGKFLPYKK 146          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PROMP (Cyanate hydratase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 49/144 (34.03%), Postives = 71/144 (49.31%), Query Frame = 2
Query:   59 SVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSE 487
            S+T LL   K+E   SF  +        V+VA L   QA    E A  L AAL +L  +L  ++  PP++   DP +  +P +YR  E +  +G  +K++I E+FGDGI SAIDF                 +   GK+LPY +
Sbjct:    5 SLTKLLLKAKKEKNLSFEDLGNLINRDEVWVASLFYGQATASEEEATSLIAAL-DLTSDLKEDLSTPPVKGCLDPVIPTDPLIYRFYEIMQVYGLPMKDVIQEKFGDGIMSAIDFSIE-VDKVEDPKGDRVLVKMCGKFLPYKK 146          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECOLC (Cyanate hydratase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V + L  Q  L  + A  + A L    D ++   M P     D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTEALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGECAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURCM (Cyanate hydratase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 2
Query:   53 KSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            + ++T  +   K     +F  I E TGL+  Y    L  Q  L PE A KL A    L D+ +  +   P+R   P  +  +PTVYR  E V  +G ++K +++E+FGDGI SAI+F                 IT +GKYLP
Sbjct:   11 REALTETIVDAKVRKNLTFEAINEGTGLSLAYTTAALLGQHAL-PEKAAKLVAERLGLDDDAVRLLQTIPVRGSIPGGVPTDPTVYRFYEMVQVYGSTLKALVHEKFGDGIISAINFKLDIQKVPDPEGGERAVITLNGKYLP 152          
The following BLAST results are available for this feature:
BLAST of CX287002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CYNS_BURCH1.848e-1333.78Cyanate hydratase OS=Burkholderia cenocepacia (str... [more]
CYNS_BURCC1.848e-1333.78Cyanate hydratase OS=Burkholderia cenocepacia (str... [more]
CYNS_BURCA1.848e-1333.78Cyanate hydratase OS=Burkholderia cenocepacia (str... [more]
CYNS_SYNP62.414e-1332.41Cyanate hydratase OS=Synechococcus sp. (strain ATC... [more]
CYNS_SYNE72.414e-1332.41Cyanate hydratase OS=Synechococcus elongatus (stra... [more]
CYNS_PSEP12.414e-1332.17Cyanate hydratase OS=Pseudomonas putida (strain F1... [more]
CYNS_PROMT2.414e-1335.92Cyanate hydratase OS=Prochlorococcus marinus (stra... [more]
CYNS_PROMP2.414e-1334.03Cyanate hydratase OS=Prochlorococcus marinus subsp... [more]
CYNS_ECOLC3.152e-1329.61Cyanate hydratase OS=Escherichia coli (strain ATCC... [more]
CYNS_BURCM3.152e-1334.27Cyanate hydratase OS=Burkholderia ambifaria (strai... [more]

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Properties
Property NameValue
Genbank descriptionC01003E05SK Veg1 Citrus clementina cDNA clone C01003E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287002 ID=CX287002; Name=CX287002; organism=Citrus clementina; type=EST; length=617bp
CGCACGAGGGCTAGAGTGTTTTGTGATCGAAATGGAATCAGAAACGAGCA
GGAAATCGAGCGTGACAAACCTGCTGCAAGCCGTGAAACGAGAATCCGGT
AAGTCATTTAATCAGATTGCAGAAGAGACAGGGCTGACAAACGTCTACGT
TGCGCAGCTACTCAGACGCCAAGCGCAGCTCAAGCCCGAAACTGCCCCCA
AGCTACGGGCAGCCCTGCCCGAGCTGCCCGATGAGCTTATCCACGAGATG
ATGAGACCGCCAATGAGATCGTATGACCCGAACTTGATCCAGGAACCCAC
CGTTTATAGGTTAAACGAAGCGGTTATGCATTTTGGTGAGAGTATTAAGG
AAATTATCAATGAGGAGTTTGGTGATGGCATCACGTCGGCTATAGACTTT
TACTGCTCTGTTGACAAAGTTAAAGGTGTGGATGGGAAAGATCGTGTGGT
CATTACTTTTGATGGAAAATATTTGCCTTATAGTGAGCAGAAGTCGGAGC
ACATGGTTTCAAGACTACAACAGCAGTGAAGTTAATCCATTTCCTACCTG
GTGCAGATTCTATACATGCTTAATACTTATTGTACGAGTGAACTCCCTGG
AGCTACCATAGTTGGAT
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