CX287002

Overview
NameCX287002
Unique NameCX287002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURCJ (Cyanate hydratase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S+T+R +    ++ A  R++  SF Q+ + TGL+  +V   L  Q  L P  A ++ A    L D+ +  +   P+R S D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQTARHALAETVVLAKARKN-LSFAQLTDGTGLSEAFVTAALLGQHAL-PADAARIVADKLGLDDDAVLLLQTIPLRGSIDDRVPTDPTIYRFYEMLQVYGTTLKALVHEKFGDGIISAINFRLDVKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURA4 (Cyanate hydratase OS=Burkholderia ambifaria (strain MC40-6) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 2
Query:   53 KSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            + ++T  +   K     +F  I E TGL+  Y    L  Q  L PE A KL A    L D+ +  +   P+R   P  +  +PTVYR  E V  +G ++K +++E+FGDGI SAI+F                 IT +GKYLP
Sbjct:   11 REALTETIVDAKVRKNLTFEAINEGTGLSLAYTTAALLGQHAL-PEKAAKLVAERLGLDDDAVRLLQTIPVRGSIPGGVPTDPTVYRFYEMVQVYGSTLKALVHEKFGDGIISAINFKLDIQKVPDPEGGERAVITLNGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ANAVT (Cyanate hydratase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 48/142 (33.80%), Postives = 68/142 (47.89%), Query Frame = 2
Query:   62 VTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSE 487
            +T  L   K++ G SF  +    G   V++A L  RQA    E A  L  AL   P  + H +   P++   P +  +P +YR  E +  +G  IK++I E+FGDGI SAIDF                 IT  GK+LPY +
Sbjct:    6 ITQTLLQAKKDQGLSFADLEAILGRNEVWIAALFYRQASASEEEAKLLVEALGLDPSYIQH-LTEYPIKGLGPIVPTDPLIYRFYEIMQVYGFPIKQVIQEKFGDGIMSAIDFTLD-VEKEADPKGDRVKITMSGKFLPYKK 145          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ANASP (Cyanate hydratase OS=Anabaena sp. (strain PCC 7120) GN=cynS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 49/142 (34.51%), Postives = 66/142 (46.48%), Query Frame = 2
Query:   62 VTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSE 487
            +T  L   K++ G SF  +    G   V +A L  RQA    E A  L  AL  L    I  +   P++   P +  +P +YR  E +  +G  IKE+I E+FGDGI SAIDF                 IT  GK+LPY +
Sbjct:    6 ITQTLLQAKKDKGLSFADLEATLGRDEVCIAALFYRQASASEEEAKLLVEALG-LDSSYIKHLTEYPVKGLGPVVPTDPLIYRFYEIMQVYGFPIKEVIQEKFGDGIMSAIDFTLD-VEKEADPKGDRVKITMSGKFLPYKK 145          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECOLU (Cyanate hydratase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L  + A ++ A L    D ++   M P     D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARQVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECO5E (Cyanate hydratase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L  + A ++ A L    D ++   M P     D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARQVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECO57 (Cyanate hydratase OS=Escherichia coli O157:H7 GN=cynS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L  + A ++ A L    D ++   M P     D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARQVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURVG (Cyanate hydratase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 49/143 (34.27%), Postives = 69/143 (48.25%), Query Frame = 2
Query:   53 KSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            + ++T  +   K     +F  I E TGL+  Y    L  Q  L PE A KL A    L D  +  +   P+R   P  +  +PTVYR  E V  +G ++K +++E+FGDGI SAI+F                 IT +GKYLP
Sbjct:   11 REALTETIVDAKVRKNLTFEAINEGTGLSLAYTTAALLGQHAL-PENAAKLVAERLGLDDGAVRLLQTIPVRGSTPGGVPTDPTVYRFYEMVQVYGSTLKALVHEKFGDGIISAINFKLDIQKVPDPEGGERAVITLNGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURTA (Cyanate hydratase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  104 SFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +F QI E TGL+  +    L  Q  L P  A ++ AA  +L D+ +  +   P+R   P  +  +PT+YR  E V  +G ++K +I+E+FGDGI SAI+F                 IT DGKYLP
Sbjct:   28 TFEQINEGTGLSVAFTTAALLGQHPL-PADAARVVAAKLDLDDDAVRLLQTIPVRGSIPGGVPTDPTIYRFYEIVQVYGSTLKALIHEQFGDGIISAINFKLDIKKVDDPDGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_BURS3 (Cyanate hydratase OS=Burkholderia sp. (strain 383) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 49/148 (33.11%), Postives = 77/148 (52.03%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S+T+R +    ++ A  R++  SF Q+ E TGL+  +V   L  Q  L  + A  +   L  L D+ +  +   P+R S D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    7 SQTARHALAETVVLAKARKN-LSFAQLTEGTGLSEAFVTAALLGQHALPVDAARNVADKLG-LDDDAVLLLQSIPLRGSIDDRVPTDPTIYRFYEMLQVYGTTLKALVHEKFGDGIISAINFRLDVKKVDDPEGGSRAVITLDGKYLP 152          
The following BLAST results are available for this feature:
BLAST of CX287002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CYNS_BURCJ3.152e-1333.11Cyanate hydratase OS=Burkholderia cepacia (strain ... [more]
CYNS_BURA43.152e-1334.27Cyanate hydratase OS=Burkholderia ambifaria (strai... [more]
CYNS_ANAVT3.152e-1333.80Cyanate hydratase OS=Anabaena variabilis (strain A... [more]
CYNS_ANASP3.152e-1334.51Cyanate hydratase OS=Anabaena sp. (strain PCC 7120... [more]
CYNS_ECOLU4.117e-1329.61Cyanate hydratase OS=Escherichia coli O17:K52:H18 ... [more]
CYNS_ECO5E4.117e-1329.61Cyanate hydratase OS=Escherichia coli O157:H7 (str... [more]
CYNS_ECO574.117e-1329.61Cyanate hydratase OS=Escherichia coli O157:H7 GN=c... [more]
CYNS_BURVG4.117e-1334.27Cyanate hydratase OS=Burkholderia vietnamiensis (s... [more]
CYNS_BURTA4.117e-1336.51Cyanate hydratase OS=Burkholderia thailandensis (s... [more]
CYNS_BURS34.117e-1333.11Cyanate hydratase OS=Burkholderia sp. (strain 383)... [more]

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Properties
Property NameValue
Genbank descriptionC01003E05SK Veg1 Citrus clementina cDNA clone C01003E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287002 ID=CX287002; Name=CX287002; organism=Citrus clementina; type=EST; length=617bp
CGCACGAGGGCTAGAGTGTTTTGTGATCGAAATGGAATCAGAAACGAGCA
GGAAATCGAGCGTGACAAACCTGCTGCAAGCCGTGAAACGAGAATCCGGT
AAGTCATTTAATCAGATTGCAGAAGAGACAGGGCTGACAAACGTCTACGT
TGCGCAGCTACTCAGACGCCAAGCGCAGCTCAAGCCCGAAACTGCCCCCA
AGCTACGGGCAGCCCTGCCCGAGCTGCCCGATGAGCTTATCCACGAGATG
ATGAGACCGCCAATGAGATCGTATGACCCGAACTTGATCCAGGAACCCAC
CGTTTATAGGTTAAACGAAGCGGTTATGCATTTTGGTGAGAGTATTAAGG
AAATTATCAATGAGGAGTTTGGTGATGGCATCACGTCGGCTATAGACTTT
TACTGCTCTGTTGACAAAGTTAAAGGTGTGGATGGGAAAGATCGTGTGGT
CATTACTTTTGATGGAAAATATTTGCCTTATAGTGAGCAGAAGTCGGAGC
ACATGGTTTCAAGACTACAACAGCAGTGAAGTTAATCCATTTCCTACCTG
GTGCAGATTCTATACATGCTTAATACTTATTGTACGAGTGAACTCCCTGG
AGCTACCATAGTTGGAT
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