CX287002

Overview
NameCX287002
Unique NameCX287002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig19 contig Ccv1_Contig19:1..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PSEAE (Cyanate hydratase OS=Pseudomonas aeruginosa GN=cynS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 2
Query:   86 KRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLI-QEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            K   G S+  +A+ TGL   +V   L  Q  L PE A +  AA   L D+ +  +   P+R   P  I  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:   22 KARLGLSWQDLADGTGLALTFVTAALLGQHAL-PEAAARKVAAQLGLDDDAVLLLQSIPLRGSIPGGIPSDPTIYRFYEMLQVYGSTLKALVHEQFGDGIISAINFKLDIKKVEDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PSEA8 (Cyanate hydratase OS=Pseudomonas aeruginosa (strain LESB58) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 2
Query:   86 KRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLI-QEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            K   G S+  +A+ TGL   +V   L  Q  L PE A +  AA   L D+ +  +   P+R   P  I  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:   22 KARLGLSWQDLADGTGLALTFVTAALLGQHAL-PEAAARKVAAQLGLDDDAVLLLQSIPLRGSIPGGIPSDPTIYRFYEMLQVYGSTLKALVHEQFGDGIISAINFKLDIKKVEDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PHOLL (Cyanate hydratase OS=Photorhabdus luminescens subsp. laumondii GN=cynS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 50/148 (33.78%), Postives = 75/148 (50.68%), Query Frame = 2
Query:   38 SETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            S+T R +    ++ A  R++  +F  IA+ TGL+  +V   L  Q  L P  A ++     EL ++    +   P+R   P  I  +PT+YR  E V  +G ++K +++E+FGDGI SAIDF                 IT DGKYLP
Sbjct:    7 SQTPRLALTDAIIDAKARKN-LTFEDIAQGTGLSLAFVTAALLGQHPL-PADAARVVVDRLELEEDAFFLLQTIPVRGSIPGGIPTDPTIYRFYEMVQVYGSTLKALVHEQFGDGIISAIDFKLDIKKVDDPNGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECOSM (Cyanate hydratase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L P  A +L  A  +L ++ I  +   P+R   D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQAL-PADAARLVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECOSE (Cyanate hydratase OS=Escherichia coli (strain SE11) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L P  A +L  A  +L ++ I  +   P+R   D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQAL-PADAARLVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECO8A (Cyanate hydratase OS=Escherichia coli O8 (strain IAI1) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L P  A +L  A  +L ++ I  +   P+R   D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQAL-PADAARLVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECO7I (Cyanate hydratase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L P  A +L  A  +L ++ I  +   P+R   D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQAL-PADAARLVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECO55 (Cyanate hydratase OS=Escherichia coli (strain 55989 / EAEC) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L P  A +L  A  +L ++ I  +   P+R   D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQAL-PADAARLVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECO24 (Cyanate hydratase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cynS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L P  A +L  A  +L ++ I  +   P+R   D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQAL-PADAARLVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_SYNPX (Cyanate hydratase OS=Synechococcus sp. (strain WH8102) GN=cynS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 51/144 (35.42%), Postives = 68/144 (47.22%), Query Frame = 2
Query:   59 SVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSE 487
            S+T  L A K+  G SF  +    GL  V+VA L   QA    E A KL A L  L  E    +   P + S +P +  +P +YR  E +  +G  +K++I E FGDGI SAIDF                 I   GK+LPY +
Sbjct:    5 SLTATLMAAKKAKGMSFADLEAAIGLDEVWVASLFYGQATASKEEAEKL-AGLLSLDAETTAALQEYPTKGSLEPVIPTDPLIYRFYEIMQVYGMPLKDVIQEHFGDGIMSAIDFTID-VDKVEDPKGDRVKIVMCGKFLPYKK 146          
The following BLAST results are available for this feature:
BLAST of CX287002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CYNS_PSEAE5.377e-1335.61Cyanate hydratase OS=Pseudomonas aeruginosa GN=cyn... [more]
CYNS_PSEA85.377e-1335.61Cyanate hydratase OS=Pseudomonas aeruginosa (strai... [more]
CYNS_PHOLL5.377e-1333.78Cyanate hydratase OS=Photorhabdus luminescens subs... [more]
CYNS_ECOSM5.377e-1330.72Cyanate hydratase OS=Escherichia coli (strain SMS-... [more]
CYNS_ECOSE5.377e-1330.72Cyanate hydratase OS=Escherichia coli (strain SE11... [more]
CYNS_ECO8A5.377e-1330.72Cyanate hydratase OS=Escherichia coli O8 (strain I... [more]
CYNS_ECO7I5.377e-1330.72Cyanate hydratase OS=Escherichia coli O7:K1 (strai... [more]
CYNS_ECO555.377e-1330.72Cyanate hydratase OS=Escherichia coli (strain 5598... [more]
CYNS_ECO245.377e-1330.72Cyanate hydratase OS=Escherichia coli O139:H28 (st... [more]
CYNS_SYNPX7.023e-1335.42Cyanate hydratase OS=Synechococcus sp. (strain WH8... [more]

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Properties
Property NameValue
Genbank descriptionC01003E05SK Veg1 Citrus clementina cDNA clone C01003E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287002 ID=CX287002; Name=CX287002; organism=Citrus clementina; type=EST; length=617bp
CGCACGAGGGCTAGAGTGTTTTGTGATCGAAATGGAATCAGAAACGAGCA
GGAAATCGAGCGTGACAAACCTGCTGCAAGCCGTGAAACGAGAATCCGGT
AAGTCATTTAATCAGATTGCAGAAGAGACAGGGCTGACAAACGTCTACGT
TGCGCAGCTACTCAGACGCCAAGCGCAGCTCAAGCCCGAAACTGCCCCCA
AGCTACGGGCAGCCCTGCCCGAGCTGCCCGATGAGCTTATCCACGAGATG
ATGAGACCGCCAATGAGATCGTATGACCCGAACTTGATCCAGGAACCCAC
CGTTTATAGGTTAAACGAAGCGGTTATGCATTTTGGTGAGAGTATTAAGG
AAATTATCAATGAGGAGTTTGGTGATGGCATCACGTCGGCTATAGACTTT
TACTGCTCTGTTGACAAAGTTAAAGGTGTGGATGGGAAAGATCGTGTGGT
CATTACTTTTGATGGAAAATATTTGCCTTATAGTGAGCAGAAGTCGGAGC
ACATGGTTTCAAGACTACAACAGCAGTGAAGTTAATCCATTTCCTACCTG
GTGCAGATTCTATACATGCTTAATACTTATTGTACGAGTGAACTCCCTGG
AGCTACCATAGTTGGAT
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