CX287002

Overview
NameCX287002
Unique NameCX287002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECOLI (Cyanate hydratase OS=Escherichia coli (strain K12) GN=cynS PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 45/152 (29.61%), Postives = 73/152 (48.03%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L  + A  + A L    D ++   M P     D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECODH (Cyanate hydratase OS=Escherichia coli (strain K12 / DH10B) GN=cynS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 45/152 (29.61%), Postives = 73/152 (48.03%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L  + A  + A L    D ++   M P     D  +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PROM1 (Cyanate hydratase OS=Prochlorococcus marinus (strain NATL1A) GN=cynS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 50/142 (35.21%), Postives = 71/142 (50.00%), Query Frame = 2
Query:   65 TNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSE 487
            T LL   K+E G +F  I    GL  V+VA L   Q+    E A KL   L  L  E    +  PP++ S DP +  +P +YR  E +  +G  +K++I E+FGDGI SAIDF  +              ++  GK+LPY +
Sbjct:    7 TQLLLKAKKEKGLTFADIGILLGLDEVWVASLFYGQSTASDEEADKLLTTLG-LGTEHKEILTTPPVKGSLDPVIPTDPLIYRFYEIMQVYGMPMKDVIQEKFGDGIMSAIDFTIN-VDKVEDPKGDRVKVSMCGKFLPYKK 146          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PSEA7 (Cyanate hydratase OS=Pseudomonas aeruginosa (strain PA7) GN=cynS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 46/132 (34.85%), Postives = 66/132 (50.00%), Query Frame = 2
Query:   86 KRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            K   G S+  +A+ TGL   +V   L  Q  L PE A +  A    L D+ +  +   P+R   P  I  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:   22 KARLGLSWQDLADGTGLALTFVTAALLGQHAL-PEAAARKVAGQLGLDDDAVLLLQTIPLRGSIPGGIPTDPTIYRFYEMLQVYGSTLKALVHEQFGDGIISAINFKLDIQKVEDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_ECOHS (Cyanate hydratase OS=Escherichia coli O9:H4 (strain HS) GN=cynS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 46/153 (30.07%), Postives = 77/153 (50.33%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + +  + + +   K +   SF +IA+ TGL   +V   L  Q  L P  A +L  A  +L ++ I  +   P+R   D  +  +PT++R  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQAL-PADAARLVGAKLDLDEDAILLLQMIPLRGCIDDRIPTDPTMHRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PSEAB (Cyanate hydratase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=cynS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 2
Query:   86 KRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLI-QEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            K   G S+  +A+ TG+    V   +  Q  L PE A +  AA   + D+ +  +   P+R   P  I  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:   22 KARLGLSWQDLADGTGIALTLVTAAMFGQHAL-PEAAARKVAAQLGMDDDAVLLLQSIPLRGSIPGGIPSDPTIYRFYEMLQVYGSTLKALVHEQFGDGIISAINFKLDIKKVEDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_THIDA (Cyanate hydratase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cynS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 48/144 (33.33%), Postives = 69/144 (47.92%), Query Frame = 2
Query:   53 KSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPY 481
            +  VT L+   KR     + Q+AE TG +  + A  L  Q  L    A  +   L +LP + +  +   P +   P  +  +P +YR  E +  +G SIKE+I+EEFGDGI SAIDF                 I  +GK+LPY
Sbjct:    3 RDQVTQLVLDSKRRKQLKWAQLAEATGQSKEWTAAALLGQMTLSAAQAGAVGRLL-DLPADAVDGLQVVPYKGSLPTAVPTDPLIYRFYELINVYGTSIKELIHEEFGDGIMSAIDF-SMDISREADPKGDRVRIVLNGKFLPY 144          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_PSEE4 (Cyanate hydratase OS=Pseudomonas entomophila (strain L48) GN=cynS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 46/153 (30.07%), Postives = 76/153 (49.67%), Query Frame = 2
Query:   23 VIEMESETSRKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMR-SYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLP 478
            +I+ +   + + +++ ++   K     SF QI E TGL+  +V   L  Q  L P +A ++      L  + I  +   P+R S    +  +PT+YR  E +  +G ++K +++E+FGDGI SAI+F                 IT DGKYLP
Sbjct:    1 MIQSQISQNARLALSEVILLAKARKDLSFAQITEGTGLSEAFVTAALLGQHPL-PASAAQVVGDKLGLDADGIALLQTIPLRGSIQGGVPTDPTIYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVDDPEGGSRAVITLDGKYLP 152          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_MYCPA (Cyanate hydratase OS=Mycobacterium paratuberculosis GN=cynS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 45/150 (30.00%), Postives = 73/150 (48.67%), Query Frame = 2
Query:   53 KSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSEQKSE 499
            ++ +T  +   +   G ++ ++A+  G   ++    L  Q  +  E    L   L  L +  +  +  PPMR   P  +  +PT+YR  EA+  +G ++KE+I E+FGDGI SAI+F                 +TFDGK+LPY    SE
Sbjct:    7 RNQLTEQIVVARLAKGLTWQELADAIGRPLLWTTSALLGQHPIPAELGRILVDKLG-LDESAVPVLAAPPMRGGLPTAVPTDPTIYRFYEALQVYGGALKEVIAEQFGDGIMSAINFSVD-LQKKPHPSGDRVVVTFDGKFLPYQWVSSE 154          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_MYCA1 (Cyanate hydratase OS=Mycobacterium avium (strain 104) GN=cynS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 45/150 (30.00%), Postives = 73/150 (48.67%), Query Frame = 2
Query:   53 KSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSEQKSE 499
            ++ +T  +   +   G ++ ++A+  G   ++    L  Q  +  E    L   L  L +  +  +  PPMR   P  +  +PT+YR  EA+  +G ++KE+I E+FGDGI SAI+F                 +TFDGK+LPY    SE
Sbjct:    7 RNQLTEQIVVARLAKGLTWQELADAIGRPLLWTTSALLGQHPIPAELGRILVDKLG-LDESAVPVLAAPPMRGGLPTAVPTDPTIYRFYEALQVYGGALKEVIAEQFGDGIMSAINFSVD-LQKKPHPSGDRVVVTFDGKFLPYQWVSSE 154          
The following BLAST results are available for this feature:
BLAST of CX287002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CYNS_ECOLI7.023e-1329.61Cyanate hydratase OS=Escherichia coli (strain K12)... [more]
CYNS_ECODH7.023e-1329.61Cyanate hydratase OS=Escherichia coli (strain K12 ... [more]
CYNS_PROM19.172e-1335.21Cyanate hydratase OS=Prochlorococcus marinus (stra... [more]
CYNS_PSEA72.043e-1234.85Cyanate hydratase OS=Pseudomonas aeruginosa (strai... [more]
CYNS_ECOHS2.043e-1230.07Cyanate hydratase OS=Escherichia coli O9:H4 (strai... [more]
CYNS_PSEAB1.014e-1133.33Cyanate hydratase OS=Pseudomonas aeruginosa (strai... [more]
CYNS_THIDA1.324e-1133.33Cyanate hydratase OS=Thiobacillus denitrificans (s... [more]
CYNS_PSEE41.324e-1130.07Cyanate hydratase OS=Pseudomonas entomophila (stra... [more]
CYNS_MYCPA2.259e-1130.00Cyanate hydratase OS=Mycobacterium paratuberculosi... [more]
CYNS_MYCA12.259e-1130.00Cyanate hydratase OS=Mycobacterium avium (strain 1... [more]

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Properties
Property NameValue
Genbank descriptionC01003E05SK Veg1 Citrus clementina cDNA clone C01003E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287002 ID=CX287002; Name=CX287002; organism=Citrus clementina; type=EST; length=617bp
CGCACGAGGGCTAGAGTGTTTTGTGATCGAAATGGAATCAGAAACGAGCA
GGAAATCGAGCGTGACAAACCTGCTGCAAGCCGTGAAACGAGAATCCGGT
AAGTCATTTAATCAGATTGCAGAAGAGACAGGGCTGACAAACGTCTACGT
TGCGCAGCTACTCAGACGCCAAGCGCAGCTCAAGCCCGAAACTGCCCCCA
AGCTACGGGCAGCCCTGCCCGAGCTGCCCGATGAGCTTATCCACGAGATG
ATGAGACCGCCAATGAGATCGTATGACCCGAACTTGATCCAGGAACCCAC
CGTTTATAGGTTAAACGAAGCGGTTATGCATTTTGGTGAGAGTATTAAGG
AAATTATCAATGAGGAGTTTGGTGATGGCATCACGTCGGCTATAGACTTT
TACTGCTCTGTTGACAAAGTTAAAGGTGTGGATGGGAAAGATCGTGTGGT
CATTACTTTTGATGGAAAATATTTGCCTTATAGTGAGCAGAAGTCGGAGC
ACATGGTTTCAAGACTACAACAGCAGTGAAGTTAATCCATTTCCTACCTG
GTGCAGATTCTATACATGCTTAATACTTATTGTACGAGTGAACTCCCTGG
AGCTACCATAGTTGGAT
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