CX287002

Overview
NameCX287002
Unique NameCX287002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_MYCVP (Cyanate hydratase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=cynS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 47/145 (32.41%), Postives = 71/145 (48.97%), Query Frame = 2
Query:   53 KSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYS 484
            +   T  + A +   G S+ Q+AE      V+    L  Q  +  E+A ++   L  L    +  +   PMR   P  +  +PT+YR  E +  +G +IKE+I+EEFGDGI SAI+F                 +TFDGK+LPY+
Sbjct:    3 REDATAEILAARLARGLSWQQLAEAIDRPLVWTISALLGQHPVPVESA-EILVELLGLDQSAVPVLAAVPMRGGLPTAVPTDPTIYRFYEVLQVYGGAIKELIHEEFGDGIMSAINFSVD-VERKPHPDGDRVVVTFDGKFLPYA 145          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_SULTO (Cyanate hydratase OS=Sulfolobus tokodaii GN=cynS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 49/135 (36.30%), Postives = 68/135 (50.37%), Query Frame = 2
Query:   86 KRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRS-YDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPYSE 487
            KRE   ++ +I +  G   VY A LL   AQ   E A K+   L +LP EL    +  PMR+   P    +P +YRL E V+ +G  IK++ +E FGDGI S ID                  +TF+GK+L YS+
Sbjct:   15 KREKRLTWEEIGKYLGRDKVYAAMLLYGYAQATEEEADKIITLL-DLPKELKPAFLDAPMRTPAQPWPPTDPFIYRLYEGVLLYGPVIKDVAHELFGDGIMSMIDVKI-YVDKVIENNYPRMVLTFNGKWLYYSK 147          
BLAST of CX287002 vs. ExPASy Swiss-Prot
Match: CYNS_RALPJ (Cyanate hydratase OS=Ralstonia pickettii (strain 12J) GN=cynS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 48/145 (33.10%), Postives = 67/145 (46.21%), Query Frame = 2
Query:   50 RKSSVTNLLQAVKRESGKSFNQIAEETGLTNVYVAQLLRRQAQLKPETAPKLRAALPELPDELIHEMMRPPMRSYDPNLIQ-EPTVYRLNEAVMHFGESIKEIINEEFGDGITSAIDFYCSXXXXXXXXXXXXXXITFDGKYLPY 481
            ++  VT L+   K     S+ Q+AE  G +  +    +  Q  L    A  +  AL ELP E I  +  PP +   P  +  +P +YR  E V  +G + K +I+EEFGDGI SAIDF                 I   GK+LPY
Sbjct:    2 QREEVTELIVLQKIRKQLSWAQLAEVIGQSKEWSTAAMLGQMTLTRAQAEAVGTAL-ELPQEAIALLQVPPYKGSLPTAVPTDPLIYRFYELVSVYGTTFKALIHEEFGDGIMSAIDFNMD-LTREPDPKGDRVRIVMSGKFLPY 144          
The following BLAST results are available for this feature:
BLAST of CX287002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CYNS_MYCVP2.951e-1132.41Cyanate hydratase OS=Mycobacterium vanbaalenii (st... [more]
CYNS_SULTO5.033e-1136.30Cyanate hydratase OS=Sulfolobus tokodaii GN=cynS P... [more]
CYNS_RALPJ8.585e-1133.10Cyanate hydratase OS=Ralstonia pickettii (strain 1... [more]

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Properties
Property NameValue
Genbank descriptionC01003E05SK Veg1 Citrus clementina cDNA clone C01003E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287002 ID=CX287002; Name=CX287002; organism=Citrus clementina; type=EST; length=617bp
CGCACGAGGGCTAGAGTGTTTTGTGATCGAAATGGAATCAGAAACGAGCA
GGAAATCGAGCGTGACAAACCTGCTGCAAGCCGTGAAACGAGAATCCGGT
AAGTCATTTAATCAGATTGCAGAAGAGACAGGGCTGACAAACGTCTACGT
TGCGCAGCTACTCAGACGCCAAGCGCAGCTCAAGCCCGAAACTGCCCCCA
AGCTACGGGCAGCCCTGCCCGAGCTGCCCGATGAGCTTATCCACGAGATG
ATGAGACCGCCAATGAGATCGTATGACCCGAACTTGATCCAGGAACCCAC
CGTTTATAGGTTAAACGAAGCGGTTATGCATTTTGGTGAGAGTATTAAGG
AAATTATCAATGAGGAGTTTGGTGATGGCATCACGTCGGCTATAGACTTT
TACTGCTCTGTTGACAAAGTTAAAGGTGTGGATGGGAAAGATCGTGTGGT
CATTACTTTTGATGGAAAATATTTGCCTTATAGTGAGCAGAAGTCGGAGC
ACATGGTTTCAAGACTACAACAGCAGTGAAGTTAATCCATTTCCTACCTG
GTGCAGATTCTATACATGCTTAATACTTATTGTACGAGTGAACTCCCTGG
AGCTACCATAGTTGGAT
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