CX287040

Overview
NameCX287040
Unique NameCX287040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.181e-15
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPER----DVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            GKQ H   + S     +FV NCL+ +Y KC  +  A  VF  M  +DVVSWNA++ GY+  G    A  LFE M E     DV++W++ +SGY   G   +A+ V  +M
Sbjct:  248 GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356          

HSP 2 Score: 69.707 bits (169), Expect = 1.106e-11
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAM 441
            G+ AHA  +V+GF   +FV N L+ +Y +C +L  A KVFD+M   DVVSWN++I  YA  G+  +A  +F  M
Sbjct:  146 GESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM 219          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.069e-14
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  184 FQELTHHRAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            F  L    +   GK  H  ++  G     +V+  L+ +Y K  ++ SA KVFD+MP+R +VS  A+I  YA +G +  AR LF++M ERD++SWN ++ GY   G  + A+ +F ++
Sbjct:  133 FSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP212_ARATH (Pentatricopeptide repeat-containing protein At3g04750, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.069e-14
Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  220 GKQAHARLIVSG--FKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAI-DVFVEM 534
            GK  H  +   G  +   + +SN L+ +Y KC     A + FD M ++D+ SWN ++ G+   G+M  A+ +F+ MP+RD++SWNSLL GY   G   + + ++F EM
Sbjct:  251 GKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEM 358          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.396e-14
Identity = 44/131 (33.59%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  172 FSRIFQELTHHRAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDV----ISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGM 552
            FS +     H    + GKQ H  ++  GF   IF+++ L+ +Y KC N+K+A K+FD+M   D VSW A+I G+A+ G    A +LFE M  + V    +++ ++L+    VG   +A   F  M ++ G+
Sbjct:  346 FSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGL 476          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.823e-14
Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDK---------MPQR-----DVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            GKQ H   +  GF    FV + L+++Y+ C  +K A  +F K         M  R     ++V WN +I GY   G+   AR LF+ M +R V+SWN+++SGY L G F  A++VF EM
Sbjct:  147 GKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM 265          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.823e-14
Identity = 36/107 (33.64%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  214 NPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            N GK+ +  +  +G + TI + N L+ ++ KC ++  A ++FD + +R +VSW  +I GYA  G + ++R LF+ M E+DV+ WN+++ G +       A+ +F EM
Sbjct:  274 NRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEM 380          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP201_ARATH (Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.380e-14
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPE-RDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            G Q H+++   GF   ++VS  ++ +Y K   +  A   FD+MP R  VSW ALI GY   GE+ +A  LF+ MP  +DV+ +N+++ G++  GD + A  +F EM
Sbjct:   97 GLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEM 202          

HSP 2 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 30/89 (33.71%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  268 IFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            + + N ++  ++K  ++ SA ++FD+M  + V++W  +I GY    ++  AR LF+AMPER+++SWN+++ GY       + I +F EM
Sbjct:  176 VVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEM 264          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PPR70_ARATH (Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.109e-14
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  232 HARLIVSGFKPTIFVSNCLIQLYIKC-SNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            H  L  SGF   + V   L+  Y    S++  A ++FD+M +R+VVSW A++ GYA  G++  A  LFE MPERDV SWN++L+     G F +A+ +F  M
Sbjct:  149 HTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRM 250          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.109e-14
Identity = 41/107 (38.32%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVS-NCLIQLYIKCSNLKSALKVFDKMPQR-DVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            GK A AR +  G      V+   +I  YIK  +++ A ++FD++  R +VV+W A++ GY    ++ IA  LF+ MPER+V+SWN+++ GY   G   KA+++F EM
Sbjct:   60 GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEM 166          

HSP 2 Score: 75.485 bits (184), Expect = 2.015e-13
Identity = 32/85 (37.65%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  280 NCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            N +++  ++   +  A+ +F++MP+RDVVSW A++ G A  G++  AR LF+ MPER++ISWN++++GY       +A  +F  M
Sbjct:  175 NSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVM 259          

HSP 3 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  286 LIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGR 540
            ++  Y++   L  A  +F +MP+R+VVSWN +I GYA  G +  A  LF+ MPER+++SWNS++   +  G   +A+++F  M R
Sbjct:  115 MVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPR 199          

HSP 4 Score: 70.8626 bits (172), Expect = 4.964e-12
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  304 KCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            K   +  A ++FD MP+R+++SWNA+I GYA    +  A  LF+ MPERD  SWN++++G++   + +KA  +F  M
Sbjct:  214 KNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRM 290          

HSP 5 Score: 69.707 bits (169), Expect = 1.106e-11
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  280 NCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVF 525
            N +I  Y +   +  AL++FD+MP+R++VSWN+++     RG +  A  LFE MP RDV+SW +++ G    G   +A  +F
Sbjct:  144 NTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLF 225          

HSP 6 Score: 68.5514 bits (166), Expect = 2.463e-11
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVS-NCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGR 540
            GK   AR +         +S N +I  Y + + +  A ++F  MP+RD  SWN +I G+    EM  A  LF+ MPE++VISW ++++GY+   +  +A++VF +M R
Sbjct:  216 GKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLR 323          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.060e-14
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGR 540
            GKQ HA  ++     +    N L+ LY KC     A  +F+KMP +D+VSWNAL+ GY   G +G A+ +F+ M E++++SW  ++SG    G   + + +F  M R
Sbjct:  305 GKQVHA-YVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 410          

HSP 2 Score: 68.1662 bits (165), Expect = 3.217e-11
Identity = 35/115 (30.43%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  223 KQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMP--ERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDN 561
            +  H  +I  GF+P   + N LI +Y K S L  A ++FD++ + D ++   ++ GY   G++ +AR +FE  P   RD + +N++++G+    D   AI++F +M       DN
Sbjct:   34 RAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDN 148          
The following BLAST results are available for this feature:
BLAST of CX287040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PP390_ARATH8.181e-1539.45Pentatricopeptide repeat-containing protein At5g16... [more]
PP354_ARATH1.069e-1435.90Pentatricopeptide repeat-containing protein At4g37... [more]
PP212_ARATH1.069e-1436.11Pentatricopeptide repeat-containing protein At3g04... [more]
PP251_ARATH1.396e-1433.59Putative pentatricopeptide repeat-containing prote... [more]
PP425_ARATH1.823e-1437.82Pentatricopeptide repeat-containing protein At5g48... [more]
PP169_ARATH1.823e-1433.64Pentatricopeptide repeat-containing protein At2g22... [more]
PP201_ARATH2.380e-1437.74Pentatricopeptide repeat-containing protein At2g44... [more]
PPR70_ARATH3.109e-1441.18Pentatricopeptide repeat-containing protein At1g33... [more]
PP185_ARATH3.109e-1438.32Pentatricopeptide repeat-containing protein At2g35... [more]
PPR57_ARATH4.060e-1436.45Pentatricopeptide repeat-containing protein At1g25... [more]

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Properties
Property NameValue
Genbank descriptionC01003H08SK Veg1 Citrus clementina cDNA clone C01003H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287040 ID=CX287040; Name=CX287040; organism=Citrus clementina; type=EST; length=563bp
CGGCACGAGGCATGAGTCTGAAATTTGATGGCCTATTACCTATGGCTGAT
CAGATTCCTATCGAAGCCTCAATGCAAAACATTTCTCATTGCTTCATTCT
CTACATTCACTACGCTAAAAGAAGGAAAAACAACAGCACCAGCAATCACA
ACGAAGCCAAAAACTATTACTTTCTCTCGCATTTTCCAAGAATTGACGCA
TCACCGGGCGCAAAACCCGGGGAAACAAGCCCATGCTCGCTTGATAGTAT
CTGGGTTCAAGCCAACAATTTTTGTCTCCAATTGCTTGATCCAATTGTAC
ATTAAATGCTCCAATTTGAAGTCAGCGCTTAAGGTGTTTGACAAAATGCC
TCAAAGGGATGTTGTTTCTTGGAATGCTTTGATTTTCGGGTACGCAGTTC
GTGGAGAGATGGGTATTGCGAGGACTTTGTTTGAGGCTATGCCTGAAAGA
GATGTGATCTCGTGGAATTCATTGCTATCAGGGTATCTGCTCGTAGGGGA
TTTTTCAAAGGCAATTGATGTTTTTGTGGAGATGGGGAGATTGAGTGGGA
TGGTTGATAATAG
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