CX287040

Overview
NameCX287040
Unique NameCX287040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.863e-13
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  280 NCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            N ++  Y      + A K+FD+MP R+++SWN L+ GY   GE+  AR +F+ MPER+V+SW +L+ GY+  G    A  +F +M
Sbjct:   52 NSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM 136          

HSP 2 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  280 NCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVF 525
            N L+  Y+K   +  A KVFD MP+R+VVSW AL+ GY   G++ +A +LF  MPE++ +SW  +L G+L  G    A  ++
Sbjct:   83 NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY 164          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PPR24_ARATH (Pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.863e-13
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  232 HARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            H   +  GF+  ++V   L+ +Y+   N+  A KVFD+MP+R+ V+WN +I G    G+   A    E MP R V+SW +++ GY  V    +AI +F  M
Sbjct:  146 HGLTLKLGFESHVYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDKPKEAILLFSRM 246          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PPR23_ARATH (Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.863e-13
Identity = 38/105 (36.19%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            GK  H  LI +GF     +   +++LY     +  A KVFD+M +R+VV WN +I G+   G++     LF+ M ER ++SWNS++S     G   +A+++F EM
Sbjct:  121 GKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEM 225          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP191_ARATH (Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.658e-13
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  223 KQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAM 441
            +Q H  +I  GF   +FV N +I  Y KC N++SA KVFD+M +RDVVSWN++I GY+  G     + +++AM
Sbjct:  152 RQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYKAM 224          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  172 FSRIFQELTHHRAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPER-----DVISWNSLLS 480
            F+ +    T   A   G+  H + +  G K  + +SN LI +Y KC +LK A ++FD+   +DVVSWN++I GYA  G    A  LFE M  +     D I++  +LS
Sbjct:  224 FTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLS 331          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.706e-12
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPER----DVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            G+  H+ +I SGF   I+V N L+ LY  C ++ SA KVFDKMP++D+V+WN++I G+A  G+   A  L+  M  +    D  +  SLLS    +G  +    V V M
Sbjct:  140 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP116_ARATH (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.706e-12
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAM----PERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVD 558
            G+  H  + VS +K +++V N LI +Y +  N+  A ++FD+M +RD VSWNA+I  YA  G    A  LF+ M     E  VI+WN +  G L  G++  A+ +   M      +D
Sbjct:  163 GRVVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLD 279          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PPR80_ARATH (Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 35/102 (34.31%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  220 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVF 525
            G Q H  +     +  +F+ N L+ +Y K   +  A  VF  M  +D VSWN+LI G   R ++  A  LFE MP +D++SW  ++ G+   G+ SK +++F
Sbjct:  294 GSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELF 395          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  298 YIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEM 534
            Y K   +  A+++FD+MP +D V+WN +I G     EM  AR LF+   E+DV++WN+++SGY+  G   +A+ +F EM
Sbjct:  188 YAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEM 266          

HSP 2 Score: 67.3958 bits (163), Expect = 5.488e-11
Identity = 31/98 (31.63%), Postives = 56/98 (57.14%), Query Frame = 1
Query:  232 HARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVF 525
            H +++  GF    +V N LI  +  C +L  A ++FD   +   V+W+++  GYA RG++  A  LF+ MP +D ++WN +++G L   +   A ++F
Sbjct:  135 HGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELF 232          
BLAST of CX287040 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 40/114 (35.09%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  223 KQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDV----ISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGM 552
            KQAHA LI +GF+  I  +  L+  Y K   + +A  VFDK+P+++++SWNAL+ GYA  G    A  LFE M   +V    +++ ++LS     G   +  ++F+ M  + G+
Sbjct:  345 KQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGI 458          
The following BLAST results are available for this feature:
BLAST of CX287040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PPR25_ARATH5.863e-1340.00Pentatricopeptide repeat-containing protein At1g09... [more]
PPR24_ARATH5.863e-1335.64Pentatricopeptide repeat-containing protein At1g09... [more]
PPR23_ARATH5.863e-1336.19Pentatricopeptide repeat-containing protein At1g09... [more]
PP191_ARATH7.658e-1345.21Pentatricopeptide repeat-containing protein At2g37... [more]
PP192_ARATH1.306e-1236.11Pentatricopeptide repeat-containing protein At2g37... [more]
PP330_ARATH1.706e-1238.53Pentatricopeptide repeat-containing protein At4g21... [more]
PP116_ARATH1.706e-1235.04Pentatricopeptide repeat-containing protein At1g71... [more]
PPR80_ARATH2.228e-1234.31Pentatricopeptide repeat-containing protein At1g53... [more]
PP385_ARATH2.910e-1240.51Pentatricopeptide repeat-containing protein At5g15... [more]
PP427_ARATH3.800e-1235.09Pentatricopeptide repeat-containing protein At5g50... [more]

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Properties
Property NameValue
Genbank descriptionC01003H08SK Veg1 Citrus clementina cDNA clone C01003H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287040 ID=CX287040; Name=CX287040; organism=Citrus clementina; type=EST; length=563bp
CGGCACGAGGCATGAGTCTGAAATTTGATGGCCTATTACCTATGGCTGAT
CAGATTCCTATCGAAGCCTCAATGCAAAACATTTCTCATTGCTTCATTCT
CTACATTCACTACGCTAAAAGAAGGAAAAACAACAGCACCAGCAATCACA
ACGAAGCCAAAAACTATTACTTTCTCTCGCATTTTCCAAGAATTGACGCA
TCACCGGGCGCAAAACCCGGGGAAACAAGCCCATGCTCGCTTGATAGTAT
CTGGGTTCAAGCCAACAATTTTTGTCTCCAATTGCTTGATCCAATTGTAC
ATTAAATGCTCCAATTTGAAGTCAGCGCTTAAGGTGTTTGACAAAATGCC
TCAAAGGGATGTTGTTTCTTGGAATGCTTTGATTTTCGGGTACGCAGTTC
GTGGAGAGATGGGTATTGCGAGGACTTTGTTTGAGGCTATGCCTGAAAGA
GATGTGATCTCGTGGAATTCATTGCTATCAGGGTATCTGCTCGTAGGGGA
TTTTTCAAAGGCAATTGATGTTTTTGTGGAGATGGGGAGATTGAGTGGGA
TGGTTGATAATAG
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