CX287059

Overview
NameCX287059
Unique NameCX287059
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length315
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig498 contig Ccv1_Contig498:237..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.014e-16
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 2
Query:    2 DPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLV 310
            DP ++LQ+W+    +PC+W  I+CN D++V  L L NS L G +  +LG L  LQ L+L  N+  G +PV   N + L  LDL +N +SG+IP ++  L +L+
Sbjct:   39 DPLSLLQTWNYKHESPCSWRGISCNNDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLL 141          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: HSL1_ARATH (Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.859e-16
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 2
Query:    2 DPDNVLQSWDPTLVNPCTWFHITCNQD-NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLV 310
            DPD+ L SW+    +PC W  ++C  D + VT +DL ++NL+G     + +L +L +L LY N+I  T+P+ +   KSL +LDL  N ++G++P +LA + +LV
Sbjct:   32 DPDSYLSSWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANLAGPFPSVICRLSNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQTLADIPTLV 135          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 9.994e-16
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 2
Query:    5 PDNVLQSWDPTLVNPCTWFHITCNQDN--RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSL 289
            PD  + S   T  + C W  ITCN +N  RV RL+LGN  LSG+L   LGKL+ ++ L L +N I+ +IP+ + NLK+L +LDL +N++SG IP S+
Sbjct:   50 PDGWINSSSST--DCCNWTGITCNSNNTGRVIRLELGNKKLSGKLSESLGKLDEIRVLNLSRNFIKDSIPLSIFNLKNLQTLDLSSNDLSGGIPTSI 144          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.705e-15
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 2
Query:    2 DPDNVLQSWDPTLVNPCTWFHITCNQD-NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLV 310
            DP  V+ +W+    +PC W  I C+   + V ++++  S++ G L PELG++ +LQ L L+ N + GTIP E+GNLK+L  LDL NN++ G IP  +  L  ++
Sbjct:   41 DPLLVMSNWNDPNSDPCDWTGIYCSPSKDHVIKINISASSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIM 144          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.960e-15
Identity = 50/125 (40.00%), Postives = 63/125 (50.40%), Query Frame = 2
Query:    8 DNVLQSWDPTLVNPCTWFHITCN-QDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNN------------------------IQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSL 307
            D V+  W P   +PC W  +TC+ +  RV  L L    L G L PELGKL+ L+ L L+ N                         I GTIP E+GNL  L +LDL NNN++G IP SL +LK L
Sbjct:   47 DGVIGLWRPEDPDPCNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRL 171          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.215e-14
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = 2
Query:    5 PDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSL 307
            P ++ QSW+ +   PC+W  + C++   V  L+L +  +SG   PE+  L+HL+ + L  N   G+IP +LGN   L  +DL +N+ +G IP +L  L++L
Sbjct:   42 PSDITQSWNASDSTPCSWLGVECDRRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNL 142          

HSP 2 Score: 70.4774 bits (171), Expect = 3.009e-12
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 2
Query:   98 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLV 310
            L L  + L G +  ELG L  LQYL LY NN+ G +P+ +  ++SL SL LY NN+SG++P  + +LK LV
Sbjct:  337 LQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLV 407          

HSP 3 Score: 66.6254 bits (161), Expect = 4.345e-11
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   86 RVTRLD---LGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSL 307
            ++T+LD   L  ++ SGR+ PELGK + +  L+L +N ++G IP ELG L  L  L LY NN+SG++P S+ K++SL
Sbjct:  306 QLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSL 382          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: Y5458_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45840 OS=Arabidopsis thaliana GN=At5g45840 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.484e-14
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:    2 DPDNVLQSWDPTLVNP-CTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKL 298
            DP   L +W+ +  +  C+WF +TC  DN+V  L+L   +L G L PEL +L  L+ L L KN + G IP E  +   L  LDL +NN++G +PP L K+
Sbjct:   47 DPHGTLANWNVSDHDHFCSWFGVTC-VDNKVQMLNLSGCSLGGTLAPELSQLSELRSLILSKNKLSGDIPNEFASFAKLEFLDLRDNNLNGVVPPELNKV 145          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: MRH1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.484e-14
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 2
Query:    2 DPDNVLQSWDPTLVNP-CTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSL 307
            DP   L +W+ + +N  C W  +TC  D +V  LDL   +L G L PEL +L  L+ L L +N+  G IP E G+ ++L  LDL  N++SG+IPP L+   SL
Sbjct:   43 DPHGTLANWNVSGINDLCYWSGVTC-VDGKVQILDLSGYSLEGTLAPELSQLSDLRSLILSRNHFSGGIPKEYGSFENLEVLDLRENDLSGQIPPELSNGLSL 144          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.354e-14
Identity = 38/102 (37.25%), Postives = 61/102 (59.80%), Query Frame = 2
Query:    8 DNVLQSWDPTLVNPCTWFHITCNQDN--RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSL 307
            D+ L+ W+   +N C+W  +TC+     RV  L+L    L+G + P  G+ ++L +L+L  NN+ G IP  L NL SL SL L++N ++G+IP  L  L ++
Sbjct:   44 DDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNI 145          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: Y4361_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.084e-13
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 2
Query:    2 DPDNVLQSWDP-TLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSL 307
            DP   L SWDP T   PC W  + C  ++RVT + L    LSGR+   +  L  L+ L L  N+  GTIP  L     L+S+ L  N++SGK+PP++  L SL
Sbjct:   41 DPLGALTSWDPSTPAAPCDWRGVGCT-NHRVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSL 142          
The following BLAST results are available for this feature:
BLAST of CX287059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
Y4372_ARATH2.014e-1640.78Probable LRR receptor-like serine/threonine-protei... [more]
HSL1_ARATH5.859e-1638.46Receptor-like protein kinase HSL1 OS=Arabidopsis t... [more]
PSKR1_ARATH9.994e-1646.39Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
Y1634_ARATH1.705e-1539.42Probable LRR receptor-like serine/threonine-protei... [more]
FEI2_ARATH4.960e-1540.00LRR receptor-like serine/threonine-protein kinase ... [more]
RPK1_IPONI3.215e-1435.64Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
Y5458_ARATH5.484e-1441.00Probable LRR receptor-like serine/threonine-protei... [more]
MRH1_ARATH5.484e-1441.75Probable LRR receptor-like serine/threonine-protei... [more]
GSO1_ARATH9.354e-1437.25LRR receptor-like serine/threonine-protein kinase ... [more]
Y4361_ARATH2.084e-1340.78Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC01004B12SK Veg1 Citrus clementina cDNA clone C01004B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287059 ID=CX287059; Name=CX287059; organism=Citrus clementina; type=EST; length=315bp
AGATCCCGATAACGTGCTTCAGAGCTGGGATCCAACTCTCGTCAATCCCT
GCACTTGGTTTCACATAACCTGTAATCAGGACAACCGCGTTACCCGACTG
GATTTGGGTAATTCAAATCTATCCGGCCGTCTCGTCCCTGAACTGGGCAA
GCTCGAGCATTTGCAATACCTGGAACTTTACAAAAACAACATCCAAGGAA
CTATCCCTGTCGAGCTCGGTAACTTGAAGAGCCTCATCAGCTTGGACTTG
TATAATAACAACGTCTCGGGGAAAATCCCTCCTTCCTTGGCTAAATTGAA
ATCTCTTGTTTTTTT
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