CX287059

Overview
NameCX287059
Unique NameCX287059
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length315
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.547e-11
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 2
Query:   98 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSL 307
            +DL  ++L+G + PE G L  L  L L  NN+ G IP  L  + SL  LDL +NN+SG IPPSL KL  L
Sbjct:  538 IDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFL 607          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: Y4885_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.345e-11
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 2
Query:   89 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLV 310
            VT L++  + LSG + PE+G +  L  L L+ N + G IP  LGN+K+L  L LY N ++G IPP L +++S++
Sbjct:  264 VTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMI 337          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.345e-11
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 2
Query:   32 PTLVNPCTWFHITCNQD-NRVTRLD----LGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSLVF 313
            P  VNP    ++T NQ  N+++ L     +  +NL+G +  E+G+L+ L  LEL  NN  G+IP EL NL +L  LDL NNN+SG+IP SL  L  L +
Sbjct:  562 PVFVNPN---NVTTNQQYNQLSSLPPTIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLSY 657          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.345e-11
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = 2
Query:    2 DPDNVLQSWDPTLVNPCT--WFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNVSGKIPPSL 289
            DP   L+SW+ +  + C+  W  I C Q  +V  + L   +L GR+  ++G+L+ L+ L L+ NN+ G+IP+ LG + +L  + L+NN ++G IP SL
Sbjct:   73 DPRGFLRSWNGSGFSACSGGWAGIKCAQ-GQVIVIQLPWKSLGGRISEKIGQLQALRKLSLHDNNLGGSIPMSLGLIPNLRGVQLFNNRLTGSIPASL 169          
BLAST of CX287059 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.411e-11
Identity = 46/127 (36.22%), Postives = 58/127 (45.67%), Query Frame = 2
Query:    8 DNVLQSWDPTLVNPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN---------NI----------------QGTIPVELGNLKSLISLDLYNNNVSGKIPPSLAKLKSL 307
            D + +SW  +  +PC   W  ITCN DNRV  + L N NL G+L  E+  L  LQ L+L  N         NI                 G IP  +GNL+ L  L L  N  SG IP S+ +L  L
Sbjct:   43 DTLSKSWKSS--DPCGTEWVGITCNNDNRVVSISLTNRNLKGKLPTEISTLSELQTLDLTGNPELSGPLPANIGNLRKLTFLSLMGCAFNGPIPDSIGNLEQLTRLSLNLNKFSGTIPASMGRLSKL 167          
The following BLAST results are available for this feature:
BLAST of CX287059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSKR1_DAUCA2.547e-1148.57Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
Y4885_ARATH4.345e-1141.89Probable LRR receptor-like serine/threonine-protei... [more]
PSYR1_ARATH4.345e-1143.43Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]
IMK3_ARATH4.345e-1136.73Probable leucine-rich repeat receptor-like protein... [more]
Y5977_ARATH7.411e-1136.22Probable leucine-rich repeat receptor-like protein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004B12SK Veg1 Citrus clementina cDNA clone C01004B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287059 ID=CX287059; Name=CX287059; organism=Citrus clementina; type=EST; length=315bp
AGATCCCGATAACGTGCTTCAGAGCTGGGATCCAACTCTCGTCAATCCCT
GCACTTGGTTTCACATAACCTGTAATCAGGACAACCGCGTTACCCGACTG
GATTTGGGTAATTCAAATCTATCCGGCCGTCTCGTCCCTGAACTGGGCAA
GCTCGAGCATTTGCAATACCTGGAACTTTACAAAAACAACATCCAAGGAA
CTATCCCTGTCGAGCTCGGTAACTTGAAGAGCCTCATCAGCTTGGACTTG
TATAATAACAACGTCTCGGGGAAAATCCCTCCTTCCTTGGCTAAATTGAA
ATCTCTTGTTTTTTT
back to top