CX287060

Overview
NameCX287060
Unique NameCX287060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_SPOFR (60S ribosomal protein L24 OS=Spodoptera frugiperda GN=RpL24 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.696e-16
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    4 FLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            F F NSKC+     R  P K+TWT +YR++ KK    E  KK+ R T+K Y R+IVGA+L  I  +R  KPEVR A R+ A++  KE+ K TK  K
Sbjct:   29 FTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQTKKRTRRTQK-YQRAIVGASLSDIMAKRNMKPEVRKAQRDQAIKAAKEQKKSTKAAK 123          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_ASHGO (60S ribosomal protein L24 OS=Ashbya gossypii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.696e-16
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 282
            VF F +SK    FH R  P ++ WT +YR+ HKK I  E  KK+ R T K   R++VGA+LE+I++RR+ KPE+R A R+   +  KE+ K  K
Sbjct:   28 VFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAVVGASLELIKERRSLKPEIRKAKRDEKAKADKEKKKADK 120          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_DROME (60S ribosomal protein L24 OS=Drosophila melanogaster GN=RpL24 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.599e-16
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    4 FLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            F F + KC+R +  +  P K+TWT +YR++H+K I  EA KK+ R T+K + R+IVGA+L  I  +R  KPEVR A R+ A++  KE+ +  K  K
Sbjct:   29 FTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGIEEEASKKRTRRTQK-FQRAIVGASLAEILAKRNMKPEVRKAQRDQAIKVAKEQKRAVKAAK 123          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_DICDI (60S ribosomal protein L24 OS=Dictyostelium discoideum GN=rpl24 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.006e-16
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 273
            VF F N+K +  F  ++ P  + W+ +YR+ +K      + KKK R TKK   R+IVGA+LEVIQ++R +KPEV+ AA E A REIKE+ K
Sbjct:   28 VFHFINTKVESLFFRKINPRDIRWSMVYRRIYKNTTTDVSAKKKARKTKK-VERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREIKEKKK 117          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_CANGA (60S ribosomal protein L24 OS=Candida glabrata GN=RPL24 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.844e-16
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 282
            +F F NSK    F  R  P ++ WT +YR+ HKK I  E  KK+ R T K   R+IVGA+LE+I++RR+ KPEVR A R+   +  KE+ K  K
Sbjct:   28 IFRFQNSKSASLFKQRKNPRRVAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAIVGASLELIKERRSLKPEVRKAKRDDKAKADKEKKKADK 120          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24A_YEAST (60S ribosomal protein L24-A OS=Saccharomyces cerevisiae GN=RPL24A PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.024e-15
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 282
            +F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+ K  K
Sbjct:   28 IFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEK 120          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_KLULA (60S ribosomal protein L24 OS=Kluyveromyces lactis GN=RPL24 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.747e-15
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 282
            +F F +SK    FH R  P ++ WT +YR+ HKK I  E  +K+ R + K   R++VGA+LE+I++RR+ KPEVR A R+   +  KE+ K  K
Sbjct:   28 IFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQRDEKKKADKEKKKADK 120          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24B_YEAST (60S ribosomal protein L24-B OS=Saccharomyces cerevisiae GN=RPL24B PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.282e-15
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 282
            +F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+ +  K
Sbjct:   28 IFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKRAEK 120          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_BRABE (60S ribosomal protein L24 OS=Branchiostoma belcheri GN=RPL24 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.981e-15
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 273
            V+ F N+KC+  F  +  P ++TWT +YR++HKK    E  KK+ R T K + R+I GA+L  I  +R +KPEVR A RE A++  KE+ K
Sbjct:   28 VYTFLNAKCEASFLMKRNPREITWTVLYRRKHKKGQQEEIQKKRSRRTAK-FQRAITGASLTEIMAKRNQKPEVRKAQREQAVKAAKEKKK 117          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_RAT (60S ribosomal protein L24 OS=Rattus norvegicus GN=Rpl24 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K  +  K
Sbjct:   28 VFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASK 123          
The following BLAST results are available for this feature:
BLAST of CX287060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL24_SPOFR2.696e-1646.8860S ribosomal protein L24 OS=Spodoptera frugiperda... [more]
RL24_ASHGO2.696e-1644.6860S ribosomal protein L24 OS=Ashbya gossypii GN=RP... [more]
RL24_DROME4.599e-1643.7560S ribosomal protein L24 OS=Drosophila melanogast... [more]
RL24_DICDI6.006e-1647.2560S ribosomal protein L24 OS=Dictyostelium discoid... [more]
RL24_CANGA7.844e-1645.7460S ribosomal protein L24 OS=Candida glabrata GN=R... [more]
RL24A_YEAST1.024e-1545.7460S ribosomal protein L24-A OS=Saccharomyces cerev... [more]
RL24_KLULA1.747e-1542.5560S ribosomal protein L24 OS=Kluyveromyces lactis ... [more]
RL24B_YEAST2.282e-1544.6860S ribosomal protein L24-B OS=Saccharomyces cerev... [more]
RL24_BRABE2.981e-1543.9660S ribosomal protein L24 OS=Branchiostoma belcher... [more]
RL24_RAT5.084e-1543.8860S ribosomal protein L24 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01004C01SK Veg1 Citrus clementina cDNA clone C01004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287060 ID=CX287060; Name=CX287060; organism=Citrus clementina; type=EST; length=291bp
GTTTTCCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGATT
GAAGCCATCGAAGCTTACATGGACAGCCATGTACAGGAAACAGCACAAGA
AGGACATTGCTGCTGAGGCAGTTAAGAAGAAGCGTCGTGCCACTAAGAAG
CCCTATTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCAGAAGAG
AAGAACTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTGCACTTC
GTGAAATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAG
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