CX287060

Overview
NameCX287060
Unique NameCX287060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_PAGMA (60S ribosomal protein L24 OS=Pagrus major GN=rpl24 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 282
            VF F N+KC+  F  +  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   28 VFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVAKKRTRRAVK--FQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_MOUSE (60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K  +  K
Sbjct:   28 VFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASK 123          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_MACFA (60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K  +  K
Sbjct:   28 VFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASK 123          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_ICTPU (60S ribosomal protein L24 OS=Ictalurus punctatus GN=rpl24 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 282
            VF F N+KC+  F  +  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   28 VFQFLNAKCESAFLTKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVK--FQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_HUMAN (60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K  +  K
Sbjct:   28 VFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASK 123          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_GILMI (60S ribosomal protein L24 OS=Gillichthys mirabilis GN=rpl24 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 282
            VF F N+KC+  F  +  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   28 VFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVK--FQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKES-KKAK 119          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_FELCA (60S ribosomal protein L24 OS=Felis catus GN=RPL24 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K  +  K
Sbjct:   28 VFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASK 123          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_BOVIN (60S ribosomal protein L24 OS=Bos taurus GN=RPL24 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K  +  K
Sbjct:   28 VFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASK 123          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_DANRE (60S ribosomal protein L24 OS=Danio rerio GN=rpl24 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.640e-15
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 282
            VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  KK K
Sbjct:   28 VFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEVSKKRTRRAVK--FQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKE-AKKAK 119          
BLAST of CX287060 vs. ExPASy Swiss-Prot
Match: RL24_YARLI (60S ribosomal protein L24 OS=Yarrowia lipolytica GN=RPL24 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.589e-14
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 VFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK 291
            +F F +SK    F  R  P ++ WT +YR++HKK I  E  KK+ R + K   R IVGA+L+VI+++R  +PE R+A R       KER +K  + +
Sbjct:   28 IFRFYSSKTASLFKQRKNPRRIAWTVLYRRKHKKGITEEVSKKRSRKSVKAV-RGIVGASLDVIKEKRNARPETRNATRAKHAEAAKERKEKEAERR 123          
The following BLAST results are available for this feature:
BLAST of CX287060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL24_PAGMA5.084e-1546.3260S ribosomal protein L24 OS=Pagrus major GN=rpl24... [more]
RL24_MOUSE5.084e-1543.8860S ribosomal protein L24 OS=Mus musculus GN=Rpl24... [more]
RL24_MACFA5.084e-1543.8860S ribosomal protein L24 OS=Macaca fascicularis G... [more]
RL24_ICTPU5.084e-1546.3260S ribosomal protein L24 OS=Ictalurus punctatus G... [more]
RL24_HUMAN5.084e-1543.8860S ribosomal protein L24 OS=Homo sapiens GN=RPL24... [more]
RL24_GILMI5.084e-1546.3260S ribosomal protein L24 OS=Gillichthys mirabilis... [more]
RL24_FELCA5.084e-1543.8860S ribosomal protein L24 OS=Felis catus GN=RPL24 ... [more]
RL24_BOVIN5.084e-1543.8860S ribosomal protein L24 OS=Bos taurus GN=RPL24 P... [more]
RL24_DANRE6.640e-1546.3260S ribosomal protein L24 OS=Danio rerio GN=rpl24 ... [more]
RL24_YARLI9.589e-1439.1860S ribosomal protein L24 OS=Yarrowia lipolytica G... [more]

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Properties
Property NameValue
Genbank descriptionC01004C01SK Veg1 Citrus clementina cDNA clone C01004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287060 ID=CX287060; Name=CX287060; organism=Citrus clementina; type=EST; length=291bp
GTTTTCCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGATT
GAAGCCATCGAAGCTTACATGGACAGCCATGTACAGGAAACAGCACAAGA
AGGACATTGCTGCTGAGGCAGTTAAGAAGAAGCGTCGTGCCACTAAGAAG
CCCTATTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCAGAAGAG
AAGAACTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTGCACTTC
GTGAAATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAG
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