CX287061

Overview
NameCX287061
Unique NameCX287061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length165
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.107e-25
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGA
Sbjct:   56 KYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 109
[Close]
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.364e-25
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA
Sbjct:   55 KYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 108
[Close]
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.006e-25
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA
Sbjct:   54 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 107
[Close]
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.006e-25
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA
Sbjct:   36 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 89
[Close]
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.006e-25
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA
Sbjct:   53 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 106
[Close]
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.006e-25
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA
Sbjct:   46 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 99
[Close]
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.150e-25
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGA
Sbjct:   59 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGA 112
[Close]
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.150e-25
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGA
Sbjct:   60 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGA 113
[Close]
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.150e-25
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGA
Sbjct:   57 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 110
[Close]
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.150e-25
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGA
Sbjct:   57 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 110
The following BLAST results are available for this feature:
BLAST of CX287061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB21_GOSHI4.107e-2594.44Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_APIGR5.364e-2594.44Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_SOYBN7.006e-2594.44Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_SOYBN7.006e-2594.44Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_MAIZE7.006e-2594.44Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA7.006e-2594.44Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB28_PEA9.150e-2592.59Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA9.150e-2592.59Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_ARATH9.150e-2592.59Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH9.150e-2592.59Chlorophyll a-b binding protein 165/180, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionC01004C02SK Veg1 Citrus clementina cDNA clone C01004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287061 ID=CX287061; Name=CX287061; organism=Citrus clementina; type=EST; length=165bp
AAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGGTG
AGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACCCC
GAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGGC
AATGCTTGGAGCTCT
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