CX287061

Overview
NameCX287061
Unique NameCX287061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length165
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.492e-22
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            K+LGPFS  TP+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGA
Sbjct:   46 KWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGA 99          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.237e-21
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 2
Query:   14 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS WAMLGA
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGA 50          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.137e-21
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 2
Query:    2 KYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            K+LGPFSE  TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGA
Sbjct:   40 KFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGA 94          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.137e-21
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 2
Query:    2 KYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            K+LGP+SE  TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGA
Sbjct:   43 KWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGA 97          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.016e-21
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM  A
Sbjct:   60 KYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAA 113          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.978e-20
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    5 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 154
            YLGP S   PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+
Sbjct:   56 YLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAI 105          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.764e-16
Identity = 42/54 (77.78%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    2 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            KYLGPFS + PSYLTGEF G        LSADPETFAKNRELEVIHSRWAMLGA
Sbjct:   55 KYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGA 100          
BLAST of CX287061 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 2
Query:   26 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 163
            Q P   TGEFPGDYGWDTAGLSADPETF + RELE+IH+R  +LGA
Sbjct:   71 QHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGA 116          
The following BLAST results are available for this feature:
BLAST of CX287061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB2_CHLMO2.492e-2285.19Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA1.237e-2192.00Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_DUNTE6.137e-2180.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE6.137e-2181.82Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO8.016e-2187.04Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB48_MAIZE3.978e-2086.00Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_SOYBN7.764e-1677.78Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_DUNSA1.239e-1373.91Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC01004C02SK Veg1 Citrus clementina cDNA clone C01004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287061 ID=CX287061; Name=CX287061; organism=Citrus clementina; type=EST; length=165bp
AAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGGTG
AGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACCCC
GAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGGC
AATGCTTGGAGCTCT
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