CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_ACICJ (Chaperone protein dnaK OS=Acidiphilium cryptum (strain JF-5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.744e-39
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++DEV+LVGGMTR+PKV E V   FGK P++ VNPDE VA+GAAIQG +L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQ FSTA D
Sbjct:  321 DAGVTAGEIDEVILVGGMTRMPKVIETVKTFFGKEPARNVNPDEVVAIGAAIQGAVLKGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQTFSTADD 426          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_THEYD (Chaperone protein dnaK OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.890e-39
Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++   +DEV+LVGG TR PKVQ+VV + FGK P KGVNPDE VA+GAAIQ  IL+G+VKE+LLLDVTPLSLGIETLGG+FT++I RNTTI TKKSQ+F+TAAD
Sbjct:  321 DAGLSQSQIDEVILVGGQTRTPKVQKVVQDFFGKEPHKGVNPDEVVAVGAAIQAAILKGEVKEVLLLDVTPLSLGIETLGGVFTKIIERNTTIPTKKSQIFTTAAD 426          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RICAH (Chaperone protein dnaK OS=Rickettsia akari (strain Hartford) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.890e-39
Identity = 78/106 (73.58%), Postives = 90/106 (84.91%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+ EV+LVGGMTR+PKVQE V + FG+ P KGVNPDE VALGAAIQGG+L  +V ++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQVFSTA D
Sbjct:  320 DAGLKASDIQEVVLVGGMTRMPKVQEAVKKFFGREPHKGVNPDEVVALGAAIQGGVLNKEVTDILLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFSTADD 425          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_PORGI (Chaperone protein dnaK OS=Porphyromonas gingivalis GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.890e-39
Identity = 74/106 (69.81%), Postives = 94/106 (88.68%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+DEV+LVGG TR+P +QE+V +IFGK+PSKGVNPDE VA+GAAIQGG+L G+VK++LLLDVTPLSLGIET+GG+ TRLI+ NTTI TKKS++F+TA D
Sbjct:  320 DAGMSRGDIDEVILVGGSTRIPAIQEIVEKIFGKAPSKGVNPDEVVAVGAAIQGGVLTGEVKDVLLLDVTPLSLGIETMGGVMTRLIDANTTIPTKKSEIFTTAVD 425          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_PORG3 (Chaperone protein dnaK OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.890e-39
Identity = 74/106 (69.81%), Postives = 94/106 (88.68%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+DEV+LVGG TR+P +QE+V +IFGK+PSKGVNPDE VA+GAAIQGG+L G+VK++LLLDVTPLSLGIET+GG+ TRLI+ NTTI TKKS++F+TA D
Sbjct:  320 DAGMSRGDIDEVILVGGSTRIPAIQEIVEKIFGKAPSKGVNPDEVVAVGAAIQGGVLTGEVKDVLLLDVTPLSLGIETMGGVMTRLIDANTTIPTKKSEIFTTAVD 425          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_JANSC (Chaperone protein dnaK OS=Jannaschia sp. (strain CCS1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.890e-39
Identity = 76/106 (71.70%), Postives = 94/106 (88.68%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+DEV+LVGGMTR+PKV + V++ FGK P KGVNPDE VA+GAAIQ G+L+GDVK+++LLDVTPLS+GIETLGG+FTRLI+RNTTI TKKSQ+FSTA D
Sbjct:  321 DAGLSKGDIDEVVLVGGMTRMPKVIDEVTKFFGKEPHKGVNPDEVVAMGAAIQAGVLQGDVKDVVLLDVTPLSMGIETLGGVFTRLIDRNTTIPTKKSQIFSTADD 426          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_CHLPN (Chaperone protein dnaK OS=Chlamydia pneumoniae GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.890e-39
Identity = 75/106 (70.75%), Postives = 92/106 (86.79%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++ KD+D+VLLVGGM+R+P VQE V E+FGK P+KGVNPDE VA+GAAIQGG+L G+VK++LLLDV PLSLGIETLGG+ T L+ RNTTI T+K Q+FSTAAD
Sbjct:  324 DAKLSAKDIDDVLLVGGMSRMPAVQETVKELFGKEPNKGVNPDEVVAIGAAIQGGVLGGEVKDVLLLDVIPLSLGIETLGGVMTTLVERNTTIPTQKKQIFSTAAD 429          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: HSP7M_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=AN6010 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.387e-39
Identity = 76/106 (71.70%), Postives = 92/106 (86.79%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DAN+ + +V +++LVGGMTR+PKV E V  +FG+ P+K VNPDEAVA+GAAIQG +L G+V ++LLLDVTPLSLGIETLGG+FTRLINRNTTI TKKSQ FSTAAD
Sbjct:  360 DANLQSSEVQDIILVGGMTRMPKVTESVKSLFGREPAKSVNPDEAVAIGAAIQGAVLAGEVTDVLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQTFSTAAD 465          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: HSP77_YEAST (Heat shock protein SSC1, mitochondrial OS=Saccharomyces cerevisiae GN=SSC1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.387e-39
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAA 315
            DA ++T D+ EVLLVGGM+R+PKV E V  +FGK PSK VNPDEAVA+GAA+QG +L G+V ++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQ+FSTAA
Sbjct:  349 DAGLSTSDISEVLLVGGMSRMPKVVETVKSLFGKDPSKAVNPDEAVAIGAAVQGAVLSGEVTDVLLLDVTPLSLGIETLGGVFTRLIPRNTTIPTKKSQIFSTAA 453          
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_SPHWW (Chaperone protein dnaK OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.387e-39
Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = 1
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+DEV++VGGMTR+PKV+EVV   FGK P  GVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTR+I+RNTTI TKKSQ +STA D
Sbjct:  321 DAGLKAADIDEVVMVGGMTRMPKVREVVKSYFGKEPHTGVNPDEVVAMGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRMIDRNTTIPTKKSQTYSTADD 426          
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_ACICJ3.744e-3972.64Chaperone protein dnaK OS=Acidiphilium cryptum (st... [more]
DNAK_THEYD4.890e-3971.70Chaperone protein dnaK OS=Thermodesulfovibrio yell... [more]
DNAK_RICAH4.890e-3973.58Chaperone protein dnaK OS=Rickettsia akari (strain... [more]
DNAK_PORGI4.890e-3969.81Chaperone protein dnaK OS=Porphyromonas gingivalis... [more]
DNAK_PORG34.890e-3969.81Chaperone protein dnaK OS=Porphyromonas gingivalis... [more]
DNAK_JANSC4.890e-3971.70Chaperone protein dnaK OS=Jannaschia sp. (strain C... [more]
DNAK_CHLPN4.890e-3970.75Chaperone protein dnaK OS=Chlamydia pneumoniae GN=... [more]
HSP7M_EMENI6.387e-3971.70Heat shock 70 kDa protein OS=Emericella nidulans G... [more]
HSP77_YEAST6.387e-3973.33Heat shock protein SSC1, mitochondrial OS=Saccharo... [more]
DNAK_SPHWW6.387e-3971.70Chaperone protein dnaK OS=Sphingomonas wittichii (... [more]

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Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
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