CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_PELPD (Chaperone protein dnaK OS=Pelobacter propionicus (strain DSM 2379) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.387e-39
Identity = 75/106 (70.75%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+DEV+LVGGMTR+P VQ+ V  IFGK+P++GVNPDE VA+GA IQGG+L+GDVK++LLLDVTPLSLGIETLGG+ T+LI +NTTI  +KSQVFSTAAD
Sbjct:  321 DAGLSASDIDEVILVGGMTRMPAVQKKVEAIFGKTPNRGVNPDEVVAIGAGIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIEKNTTIPCRKSQVFSTAAD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_DESVM (Chaperone protein dnaK OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.387e-39
Identity = 77/106 (72.64%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++   +DEV+LVGGMTR+P VQ+ V E FGK P++ VNPDE VA+GAAIQGGIL GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTI T+KSQ F+TAAD
Sbjct:  320 DAGLSAAQIDEVVLVGGMTRMPLVQKKVGEFFGKEPNRSVNPDEVVAMGAAIQGGILAGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTRKSQTFTTAAD 425
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_STRMK (Chaperone protein dnaK OS=Stenotrophomonas maltophilia (strain K279a) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.341e-39
Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA + + D+ EV+LVGG TR+PKVQ+ V+E FGK P K VNPDEAVALGAAIQGG+L GDVK++LLLDVTPLSLGIET+GG+FT++I +NTTI TK SQVFSTA D
Sbjct:  328 DAGLRSSDISEVILVGGQTRMPKVQQAVTEFFGKEPRKDVNPDEAVALGAAIQGGVLGGDVKDVLLLDVTPLSLGIETMGGVFTKIIEKNTTIPTKASQVFSTAED 433
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_STRM5 (Chaperone protein dnaK OS=Stenotrophomonas maltophilia (strain R551-3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.341e-39
Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA + + D+ EV+LVGG TR+PKVQ+ V+E FGK P K VNPDEAVALGAAIQGG+L GDVK++LLLDVTPLSLGIET+GG+FT++I +NTTI TK SQVFSTA D
Sbjct:  328 DAGLRSSDISEVILVGGQTRMPKVQQAVTEFFGKEPRKDVNPDEAVALGAAIQGGVLGGDVKDVLLLDVTPLSLGIETMGGVFTKIIEKNTTIPTKASQVFSTAED 433
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RICRS (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Sheila Smith) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.341e-39
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA     D+ EV+LVGGMTR+PKVQE V + FG+ P KGVNPDE VALGAAIQGG+L  +V ++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQVFSTA D
Sbjct:  320 DAGFKASDIQEVVLVGGMTRMPKVQEAVKKFFGREPHKGVNPDEVVALGAAIQGGVLNKEVTDILLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFSTADD 425
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RICRO (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Iowa) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.341e-39
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA     D+ EV+LVGGMTR+PKVQE V + FG+ P KGVNPDE VALGAAIQGG+L  +V ++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQVFSTA D
Sbjct:  320 DAGFKASDIQEVVLVGGMTRMPKVQEAVKKFFGREPHKGVNPDEVVALGAAIQGGVLNKEVTDILLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFSTADD 425
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RICPU (Chaperone protein dnaK OS=Rickettsia peacockii (strain Rustic) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.341e-39
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA     D+ EV+LVGGMTR+PKVQE V + FG+ P KGVNPDE VALGAAIQGG+L  +V ++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQVFSTA D
Sbjct:  320 DAGFKASDIQEVVLVGGMTRMPKVQEAVKKFFGREPHKGVNPDEVVALGAAIQGGVLNKEVTDILLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFSTADD 425
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RICAE (Chaperone protein dnaK OS=Rickettsia africae (strain ESF-5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.341e-39
Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA     D+ EV+LVGGMTR+PKVQE V + FG+ P KGVNPDE VALGAAIQGG+L  +V ++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQ+FSTA D
Sbjct:  320 DAGFKASDIQEVILVGGMTRMPKVQEAVKKFFGREPHKGVNPDEVVALGAAIQGGVLNKEVTDILLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQIFSTADD 425
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_GEOSL (Chaperone protein dnaK OS=Geobacter sulfurreducens GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.341e-39
Identity = 77/106 (72.64%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  +VDEV+LVGGMTR+P VQ+ V EIFGK P+KGVNPDE VA+GAAIQGG+LRGDVK++LLLDVTPLSLGIETLG + T+LI +NTTI  +KSQVFSTA+D
Sbjct:  321 DAGLSPSEVDEVILVGGMTRMPAVQKRVQEIFGKVPNKGVNPDEVVAIGAAIQGGVLRGDVKDVLLLDVTPLSLGIETLGSVMTKLIEKNTTIPCRKSQVFSTASD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_GEOMG (Chaperone protein dnaK OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.341e-39
Identity = 76/106 (71.70%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  +VDEV+LVGGMTR+P VQ+ V EIFGK+P+KGVNPDE VA+GA IQGG+LRGDVK++LLLDVTPLSLGIETLG + T+LI++NTTI  +KSQVFSTA+D
Sbjct:  321 DAGLSPSEVDEVILVGGMTRMPAVQKRVQEIFGKAPNKGVNPDEVVAIGAGIQGGVLRGDVKDVLLLDVTPLSLGIETLGSVMTKLIDKNTTIPCRKSQVFSTASD 426
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PELPD6.387e-3970.75Chaperone protein dnaK OS=Pelobacter propionicus (... [more]
DNAK_DESVM6.387e-3972.64Chaperone protein dnaK OS=Desulfovibrio vulgaris (... [more]
DNAK_STRMK8.341e-3971.70Chaperone protein dnaK OS=Stenotrophomonas maltoph... [more]
DNAK_STRM58.341e-3971.70Chaperone protein dnaK OS=Stenotrophomonas maltoph... [more]
DNAK_RICRS8.341e-3973.58Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_RICRO8.341e-3973.58Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_RICPU8.341e-3973.58Chaperone protein dnaK OS=Rickettsia peacockii (st... [more]
DNAK_RICAE8.341e-3972.64Chaperone protein dnaK OS=Rickettsia africae (stra... [more]
DNAK_GEOSL8.341e-3972.64Chaperone protein dnaK OS=Geobacter sulfurreducens... [more]
DNAK_GEOMG8.341e-3971.70Chaperone protein dnaK OS=Geobacter metallireducen... [more]

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Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
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