CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_DESAH (Chaperone protein dnaK OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.341e-39
Identity = 77/106 (72.64%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T+ D++EV+LVGGMTR+P VQE V +IF K P KGVNPDE VA+GAAIQ G+L+GDV ++LLLDVTPLSLGIETLGG+ T+LI++NTTI TKKSQVFSTAAD
Sbjct:  321 DAGLTSSDINEVVLVGGMTRMPAVQERVEKIFSKKPHKGVNPDEVVAMGAAIQAGVLQGDVHDVLLLDVTPLSLGIETLGGVMTKLIDKNTTIPTKKSQVFSTAAD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BORHD (Chaperone protein dnaK OS=Borrelia hermsii (strain DAH) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.341e-39
Identity = 75/106 (70.75%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D++EV+LVGG TR+P +Q++V EIF + P+KGVNPDEAVA+GAAIQGGIL G+ K+++LLDVTPLSLGIETLGG+ T+LI RNTTI TKKSQVFSTAAD
Sbjct:  321 DAGLKASDINEVILVGGSTRIPAIQKIVKEIFAQEPNKGVNPDEAVAIGAAIQGGILTGETKDMVLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAAD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RICCN (Chaperone protein dnaK OS=Rickettsia conorii GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.089e-38
Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA     D+ EV+LVGGMTR+PKVQE V + FG+ P KGVNPDE VALGAAIQGG+L  +V ++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQ+FSTA D
Sbjct:  320 DAGFKASDIQEVVLVGGMTRMPKVQEAVKKFFGREPHKGVNPDEVVALGAAIQGGVLNKEVTDILLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQIFSTADD 425
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_NITEC (Chaperone protein dnaK OS=Nitrosomonas eutropha (strain C91) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.089e-38
Identity = 75/106 (70.75%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+D+V+LVGG TR+PKVQ+ V EIFGK P K VNPDEAVA+GAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+ T+LI +NTTI TK  Q+FSTA D
Sbjct:  326 DAGLSVSDIDDVILVGGQTRMPKVQDKVKEIFGKEPRKDVNPDEAVAIGAAIQGGVLQGDVKDVLLLDVTPLSLGIETLGGVMTKLIQKNTTIPTKAQQIFSTAED 431
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_LACRJ (Chaperone protein dnaK OS=Lactobacillus reuteri (strain JCM 1112) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.089e-38
Identity = 75/106 (70.75%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA++T  D+DEV+L GG TR+P VQE+V E+ GK P+  +NPDEAVALGAAIQGG+L GDVK+++LLDVTPLSLGIET+GG+FT+LI+RNTTI T KSQ+FSTAAD
Sbjct:  299 DADLTFDDIDEVILNGGSTRIPAVQEMVKELTGKEPNHSINPDEAVALGAAIQGGVLTGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQIFSTAAD 404
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_LACRD (Chaperone protein dnaK OS=Lactobacillus reuteri (strain DSM 20016) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.089e-38
Identity = 75/106 (70.75%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA++T  D+DEV+L GG TR+P VQE+V E+ GK P+  +NPDEAVALGAAIQGG+L GDVK+++LLDVTPLSLGIET+GG+FT+LI+RNTTI T KSQ+FSTAAD
Sbjct:  299 DADLTFDDIDEVILNGGSTRIPAVQEMVKELTGKEPNHSINPDEAVALGAAIQGGVLTGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQIFSTAAD 404
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_GEOSF (Chaperone protein dnaK OS=Geobacter sp. (strain FRC-32) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.089e-38
Identity = 75/106 (70.75%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+DEV+LVGGMTR+P VQ+ V +IFGK P++GVNPDE VA+GAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+ TRLI +N+TI  +KSQ+FSTAAD
Sbjct:  321 DAGLSPSDIDEVILVGGMTRMPIVQKRVQDIFGKVPNRGVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTRLIEKNSTIPCRKSQIFSTAAD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_GEOLS (Chaperone protein dnaK OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.089e-38
Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++DEV+LVGGMTR+P V + V EIFGK P+KGVNPDE VA+GA IQGG+L+GDVK++LLLDVTPLSLGIETLGG+ TRLI +NTTI  +KSQ FSTAAD
Sbjct:  321 DAGLTASEIDEVILVGGMTRMPAVVQRVQEIFGKVPNKGVNPDEVVAIGAGIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVLTRLIEKNTTIPCRKSQTFSTAAD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_DESDG (Chaperone protein dnaK OS=Desulfovibrio desulfuricans (strain G20) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.089e-38
Identity = 76/106 (71.70%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  +VDEV+LVGGMTR+P VQ+ V++ FGK P++ +NPDE V++GAAIQGGIL GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQ F+TAAD
Sbjct:  320 DAGLSASEVDEVVLVGGMTRMPLVQKKVADFFGKEPNRSMNPDEVVSMGAAIQGGILAGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQTFTTAAD 425
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_NITEU (Chaperone protein dnaK OS=Nitrosomonas europaea GN=dnaK PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.423e-38
Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+++V+LVGG TR+PKVQE V EIFGK P K VNPDEAVA+GAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+ T+LI +NTTI TK  QVFSTA D
Sbjct:  326 DAGLSVSDINDVILVGGQTRMPKVQEKVKEIFGKEPRKDVNPDEAVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIQKNTTIPTKAQQVFSTADD 431
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_DESAH8.341e-3972.64Chaperone protein dnaK OS=Desulfobacterium autotro... [more]
DNAK_BORHD8.341e-3970.75Chaperone protein dnaK OS=Borrelia hermsii (strain... [more]
DNAK_RICCN1.089e-3872.64Chaperone protein dnaK OS=Rickettsia conorii GN=dn... [more]
DNAK_NITEC1.089e-3870.75Chaperone protein dnaK OS=Nitrosomonas eutropha (s... [more]
DNAK_LACRJ1.089e-3870.75Chaperone protein dnaK OS=Lactobacillus reuteri (s... [more]
DNAK_LACRD1.089e-3870.75Chaperone protein dnaK OS=Lactobacillus reuteri (s... [more]
DNAK_GEOSF1.089e-3870.75Chaperone protein dnaK OS=Geobacter sp. (strain FR... [more]
DNAK_GEOLS1.089e-3871.70Chaperone protein dnaK OS=Geobacter lovleyi (strai... [more]
DNAK_DESDG1.089e-3871.70Chaperone protein dnaK OS=Desulfovibrio desulfuric... [more]
DNAK_NITEU1.423e-3871.70Chaperone protein dnaK OS=Nitrosomonas europaea GN... [more]

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Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
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